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Fasta parsing

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Summary: This example shows how to parse and write fasta formatted files with BioFSharp

One of the various biology-associated file formats that can be manipulated using BioFSharp is the Fasta format. The Fasta format can be used to represent sequences of amino acids or nucleotides written in single-letter code.

A sequence constists of two parts: The first line (Header) starting with a ">" is followed by a sequence identification code which should represent a unique description of the sequence. Subsequent lines contain the sequence itself, which is separated into chunks of 60 to 80 characters per line. For further information about the format please visit NCBI - FASTA.

Example:

>sp|P19532| ribosomal protein L20 GN=rpl20 PE=rpl20.p01
MTRVKRGNVSRKRHKKILNMSKGFRGAASTLFRTANQQNMKALRYSYRNRRQKKRDFRRM
WITRVNSAVRRYGLNYSEFMNYLKTHKIQLNRKVIAQLSICDPEAFMQLLLF*

Reading Fasta files

open BioFSharp
open BioFSharp.IO

let fileDir = __SOURCE_DIRECTORY__ + "/data/"  //FASTAExample1.fasta"

//reads from file to an array of FastaItems.
let sequences = 
    fileDir + "Chlamy_Cp.fastA"
    |> FastA.fromFile BioArray.ofAminoAcidString
    |> Seq.toArray

sequences.[0]
Warning: Output, it-value and value references require --eval

Analogously it is possible to directly read compressed fastA files:

let sequences2 = 
    fileDir + "Chlamy_Cp.gz"
    |> FastA.fromGzipFile BioArray.ofAminoAcidString

In both cases it is worth noticing that BioArray.ofAminoAcidString can be replaced by any converter function. The converter maps from the sequence of character to either amino acid or nucleotide sequences. Therefore use BioArray.ofAminoAcidString for petide and BioArray.ofNucleotideString for gene FastA files, respectively. It is of course also possible to introduce any converter function.

Writing FastA files

In order to write a collection of sequences (FastaItem<_>) into a file use the following function.

sequences
|> FastA.write BioItem.symbol (fileDir + "FASTAExample3.fasta")

Example: protein length distribution

With the FastA reader it is straightforward to access the protein length distribution:

open Plotly.NET

let sequencesLength = 
    fileDir + "Chlamy_Cp.fastA"
    |> FastA.fromFile BioArray.ofAminoAcidString
    |> Seq.map (fun item -> item.Sequence.Length)

let distChart =
    Chart.Histogram sequencesLength
    |> Chart.withXAxisStyle("length")
    |> Chart.withYAxisStyle("#count")
Warning: Output, it-value and value references require --eval
namespace BioFSharp
namespace BioFSharp.IO
val fileDir: string
val sequences: FastA.FastaItem<BioArray.BioArray<AminoAcids.AminoAcid>> array
module FastA from BioFSharp.IO
val fromFile: converter: (char seq -> 'a) -> filePath: string -> FastA.FastaItem<'a> seq
<summary> Reads FastaItem from file. Converter determines type of sequence by converting seq&lt;char&gt; -&gt; type </summary>
Multiple items
module BioArray from BioFSharp.BioCollectionsExtensions

--------------------
module BioArray from BioFSharp
<summary> This module contains the BioArray type and its according functions. The BioArray type is an array of objects using the IBioItem interface </summary>
val ofAminoAcidString: s: #(char seq) -> BioArray.BioArray<AminoAcids.AminoAcid>
<summary> Generates amino acid sequence of one-letter-code raw string </summary>
module Seq from Microsoft.FSharp.Collections
val toArray: source: 'T seq -> 'T array
val sequences2: FastA.FastaItem<BioArray.BioArray<AminoAcids.AminoAcid>> seq
val fromGzipFile: converter: (char seq -> 'a) -> filePath: string -> FastA.FastaItem<'a> seq
<summary> Reads FastaItem from gzFile. Converter determines type of sequence by converting seq&lt;char&gt; -&gt; type </summary>
val write: toString: ('T -> char) -> filePath: string -> data: FastA.FastaItem<#('T seq)> seq -> unit
<summary> Writes FastaItem to file. Converter determines type of sequence by converting type -&gt; char. If file already exists the data is overwritten. </summary>
module BioItem from BioFSharp
<summary> Basic functions on IBioItems interface </summary>
val symbol: bItem: #IBioItem -> char
<summary> Returns the symbol of the bio item </summary>
namespace Plotly
namespace Plotly.NET
val sequencesLength: int seq
val map: mapping: ('T -> 'U) -> source: 'T seq -> 'U seq
val item: FastA.FastaItem<BioArray.BioArray<AminoAcids.AminoAcid>>
FastA.FastaItem.Sequence: BioArray.BioArray<AminoAcids.AminoAcid>
property System.Array.Length: int with get
<summary>Gets the total number of elements in all the dimensions of the <see cref="T:System.Array" />.</summary>
<exception cref="T:System.OverflowException">The array is multidimensional and contains more than <see cref="F:System.Int32.MaxValue">Int32.MaxValue</see> elements.</exception>
<returns>The total number of elements in all the dimensions of the <see cref="T:System.Array" />; zero if there are no elements in the array.</returns>
val distChart: GenericChart.GenericChart
type Chart = static member AnnotatedHeatmap: zData: #('a1 seq) seq * annotationText: #(string seq) seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?Name: string * [<Optional; DefaultParameterValue ((null :> obj))>] ?ShowLegend: bool * [<Optional; DefaultParameterValue ((null :> obj))>] ?Opacity: float * [<Optional; DefaultParameterValue ((null :> obj))>] ?X: #IConvertible seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?XGap: int * [<Optional; DefaultParameterValue ((null :> obj))>] ?Y: #IConvertible seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?YGap: int * [<Optional; DefaultParameterValue ((null :> obj))>] ?Text: 'a5 * [<Optional; DefaultParameterValue ((null :> obj))>] ?MultiText: 'a5 seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?ColorBar: ColorBar * [<Optional; DefaultParameterValue ((null :> obj))>] ?ColorScale: Colorscale * [<Optional; DefaultParameterValue ((null :> obj))>] ?ShowScale: bool * [<Optional; DefaultParameterValue ((null :> obj))>] ?ReverseScale: bool * [<Optional; DefaultParameterValue ((null :> obj))>] ?ZSmooth: SmoothAlg * [<Optional; DefaultParameterValue ((null :> obj))>] ?Transpose: bool * [<Optional; DefaultParameterValue ((false :> obj))>] ?UseWebGL: bool * [<Optional; DefaultParameterValue ((false :> obj))>] ?ReverseYAxis: bool * [<Optional; DefaultParameterValue ((true :> obj))>] ?UseDefaults: bool -> GenericChart (requires 'a1 :> IConvertible and 'a5 :> IConvertible) + 1 overload static member Area: x: #IConvertible seq * y: #IConvertible seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?ShowMarkers: bool * [<Optional; DefaultParameterValue ((null :> obj))>] ?Name: string * [<Optional; DefaultParameterValue ((null :> obj))>] ?ShowLegend: bool * [<Optional; DefaultParameterValue ((null :> obj))>] ?Opacity: float * [<Optional; DefaultParameterValue ((null :> obj))>] ?MultiOpacity: float seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?Text: 'a2 * [<Optional; DefaultParameterValue ((null :> obj))>] ?MultiText: 'a2 seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?TextPosition: TextPosition * [<Optional; DefaultParameterValue ((null :> obj))>] ?MultiTextPosition: TextPosition seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?MarkerColor: Color * [<Optional; DefaultParameterValue ((null :> obj))>] ?MarkerColorScale: Colorscale * [<Optional; DefaultParameterValue ((null :> obj))>] ?MarkerOutline: Line * [<Optional; DefaultParameterValue ((null :> obj))>] ?MarkerSymbol: MarkerSymbol * [<Optional; DefaultParameterValue ((null :> obj))>] ?MultiMarkerSymbol: MarkerSymbol seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?Marker: Marker * [<Optional; DefaultParameterValue ((null :> obj))>] ?LineColor: Color * [<Optional; DefaultParameterValue ((null :> obj))>] ?LineColorScale: Colorscale * [<Optional; DefaultParameterValue ((null :> obj))>] ?LineWidth: float * [<Optional; DefaultParameterValue ((null :> obj))>] ?LineDash: DrawingStyle * [<Optional; DefaultParameterValue ((null :> obj))>] ?Line: Line * [<Optional; DefaultParameterValue ((null :> obj))>] ?StackGroup: string * [<Optional; DefaultParameterValue ((null :> obj))>] ?Orientation: Orientation * [<Optional; DefaultParameterValue ((null :> obj))>] ?GroupNorm: GroupNorm * [<Optional; DefaultParameterValue ((null :> obj))>] ?FillColor: Color * [<Optional; DefaultParameterValue ((false :> obj))>] ?UseWebGL: bool * [<Optional; DefaultParameterValue ((true :> obj))>] ?UseDefaults: bool -> GenericChart (requires 'a2 :> IConvertible) + 1 overload static member Bar: values: #IConvertible seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?Keys: #IConvertible seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?Name: string * [<Optional; DefaultParameterValue ((null :> obj))>] ?ShowLegend: bool * [<Optional; DefaultParameterValue ((null :> obj))>] ?Opacity: float * [<Optional; DefaultParameterValue ((null :> obj))>] ?MultiOpacity: float seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?Text: 'a2 * [<Optional; DefaultParameterValue ((null :> obj))>] ?MultiText: 'a2 seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?MarkerColor: Color * [<Optional; DefaultParameterValue ((null :> obj))>] ?MarkerColorScale: Colorscale * [<Optional; DefaultParameterValue ((null :> obj))>] ?MarkerOutline: Line * [<Optional; DefaultParameterValue ((null :> obj))>] ?MarkerPatternShape: PatternShape * [<Optional; DefaultParameterValue ((null :> obj))>] ?MultiMarkerPatternShape: PatternShape seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?MarkerPattern: Pattern * [<Optional; DefaultParameterValue ((null :> obj))>] ?Marker: Marker * [<Optional; DefaultParameterValue ((null :> obj))>] ?Base: #IConvertible * [<Optional; DefaultParameterValue ((null :> obj))>] ?Width: 'a4 * [<Optional; DefaultParameterValue ((null :> obj))>] ?MultiWidth: 'a4 seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?TextPosition: TextPosition * [<Optional; DefaultParameterValue ((null :> obj))>] ?MultiTextPosition: TextPosition seq * [<Optional; DefaultParameterValue ((true :> obj))>] ?UseDefaults: bool -> GenericChart (requires 'a2 :> IConvertible and 'a4 :> IConvertible) + 1 overload static member BoxPlot: [<Optional; DefaultParameterValue ((null :> obj))>] ?X: #IConvertible seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?Y: #IConvertible seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?Name: string * [<Optional; DefaultParameterValue ((null :> obj))>] ?ShowLegend: bool * [<Optional; DefaultParameterValue ((null :> obj))>] ?Text: 'a2 * [<Optional; DefaultParameterValue ((null :> obj))>] ?MultiText: 'a2 seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?FillColor: Color * [<Optional; DefaultParameterValue ((null :> obj))>] ?MarkerColor: Color * [<Optional; DefaultParameterValue ((null :> obj))>] ?Marker: Marker * [<Optional; DefaultParameterValue ((null :> obj))>] ?Opacity: float * [<Optional; DefaultParameterValue ((null :> obj))>] ?WhiskerWidth: float * [<Optional; DefaultParameterValue ((null :> obj))>] ?BoxPoints: BoxPoints * [<Optional; DefaultParameterValue ((null :> obj))>] ?BoxMean: BoxMean * [<Optional; DefaultParameterValue ((null :> obj))>] ?Jitter: float * [<Optional; DefaultParameterValue ((null :> obj))>] ?PointPos: float * [<Optional; DefaultParameterValue ((null :> obj))>] ?Orientation: Orientation * [<Optional; DefaultParameterValue ((null :> obj))>] ?OutlineColor: Color * [<Optional; DefaultParameterValue ((null :> obj))>] ?OutlineWidth: float * [<Optional; DefaultParameterValue ((null :> obj))>] ?Outline: Line * [<Optional; DefaultParameterValue ((null :> obj))>] ?AlignmentGroup: string * [<Optional; DefaultParameterValue ((null :> obj))>] ?OffsetGroup: string * [<Optional; DefaultParameterValue ((null :> obj))>] ?Notched: bool * [<Optional; DefaultParameterValue ((null :> obj))>] ?NotchWidth: float * [<Optional; DefaultParameterValue ((null :> obj))>] ?QuartileMethod: QuartileMethod * [<Optional; DefaultParameterValue ((true :> obj))>] ?UseDefaults: bool -> GenericChart (requires 'a2 :> IConvertible) + 2 overloads static member Bubble: x: #IConvertible seq * y: #IConvertible seq * sizes: int seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?Name: string * [<Optional; DefaultParameterValue ((null :> obj))>] ?ShowLegend: bool * [<Optional; DefaultParameterValue ((null :> obj))>] ?Opacity: float * [<Optional; DefaultParameterValue ((null :> obj))>] ?MultiOpacity: float seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?Text: 'a2 * [<Optional; DefaultParameterValue ((null :> obj))>] ?MultiText: 'a2 seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?TextPosition: TextPosition * [<Optional; DefaultParameterValue ((null :> obj))>] ?MultiTextPosition: TextPosition seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?MarkerColor: Color * [<Optional; DefaultParameterValue ((null :> obj))>] ?MarkerColorScale: Colorscale * [<Optional; DefaultParameterValue ((null :> obj))>] ?MarkerOutline: Line * [<Optional; DefaultParameterValue ((null :> obj))>] ?MarkerSymbol: MarkerSymbol * [<Optional; DefaultParameterValue ((null :> obj))>] ?MultiMarkerSymbol: MarkerSymbol seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?Marker: Marker * [<Optional; DefaultParameterValue ((null :> obj))>] ?LineColor: Color * [<Optional; DefaultParameterValue ((null :> obj))>] ?LineColorScale: Colorscale * [<Optional; DefaultParameterValue ((null :> obj))>] ?LineWidth: float * [<Optional; DefaultParameterValue ((null :> obj))>] ?LineDash: DrawingStyle * [<Optional; DefaultParameterValue ((null :> obj))>] ?Line: Line * [<Optional; DefaultParameterValue ((null :> obj))>] ?StackGroup: string * [<Optional; DefaultParameterValue ((null :> obj))>] ?Orientation: Orientation * [<Optional; DefaultParameterValue ((null :> obj))>] ?GroupNorm: GroupNorm * [<Optional; DefaultParameterValue ((false :> obj))>] ?UseWebGL: bool * [<Optional; DefaultParameterValue ((true :> obj))>] ?UseDefaults: bool -> GenericChart (requires 'a2 :> IConvertible) + 1 overload static member Candlestick: ``open`` : #IConvertible seq * high: #IConvertible seq * low: #IConvertible seq * close: #IConvertible seq * x: #IConvertible seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?Name: string * [<Optional; DefaultParameterValue ((null :> obj))>] ?ShowLegend: bool * [<Optional; DefaultParameterValue ((null :> obj))>] ?Opacity: float * [<Optional; DefaultParameterValue ((null :> obj))>] ?Text: 'a5 * [<Optional; DefaultParameterValue ((null :> obj))>] ?MultiText: 'a5 seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?Line: Line * [<Optional; DefaultParameterValue ((null :> obj))>] ?IncreasingColor: Color * [<Optional; DefaultParameterValue ((null :> obj))>] ?Increasing: FinanceMarker * [<Optional; DefaultParameterValue ((null :> obj))>] ?DecreasingColor: Color * [<Optional; DefaultParameterValue ((null :> obj))>] ?Decreasing: FinanceMarker * [<Optional; DefaultParameterValue ((null :> obj))>] ?WhiskerWidth: float * [<Optional; DefaultParameterValue ((true :> obj))>] ?UseDefaults: bool -> GenericChart (requires 'a5 :> IConvertible) + 1 overload static member Column: values: #IConvertible seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?Keys: #IConvertible seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?Name: string * [<Optional; DefaultParameterValue ((null :> obj))>] ?ShowLegend: bool * [<Optional; DefaultParameterValue ((null :> obj))>] ?Opacity: float * [<Optional; DefaultParameterValue ((null :> obj))>] ?MultiOpacity: float seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?Text: 'a2 * [<Optional; DefaultParameterValue ((null :> obj))>] ?MultiText: 'a2 seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?MarkerColor: Color * [<Optional; DefaultParameterValue ((null :> obj))>] ?MarkerColorScale: Colorscale * [<Optional; DefaultParameterValue ((null :> obj))>] ?MarkerOutline: Line * [<Optional; DefaultParameterValue ((null :> obj))>] ?MarkerPatternShape: PatternShape * [<Optional; DefaultParameterValue ((null :> obj))>] ?MultiMarkerPatternShape: PatternShape seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?MarkerPattern: Pattern * [<Optional; DefaultParameterValue ((null :> obj))>] ?Marker: Marker * [<Optional; DefaultParameterValue ((null :> obj))>] ?Base: #IConvertible * [<Optional; DefaultParameterValue ((null :> obj))>] ?Width: 'a4 * [<Optional; DefaultParameterValue ((null :> obj))>] ?MultiWidth: 'a4 seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?TextPosition: TextPosition * [<Optional; DefaultParameterValue ((null :> obj))>] ?MultiTextPosition: TextPosition seq * [<Optional; DefaultParameterValue ((true :> obj))>] ?UseDefaults: bool -> GenericChart (requires 'a2 :> IConvertible and 'a4 :> IConvertible) + 1 overload static member Contour: zData: #('a1 seq) seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?Name: string * [<Optional; DefaultParameterValue ((null :> obj))>] ?ShowLegend: bool * [<Optional; DefaultParameterValue ((null :> obj))>] ?Opacity: float * [<Optional; DefaultParameterValue ((null :> obj))>] ?X: #IConvertible seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?Y: #IConvertible seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?Text: 'a4 * [<Optional; DefaultParameterValue ((null :> obj))>] ?MultiText: 'a4 seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?ColorBar: ColorBar * [<Optional; DefaultParameterValue ((null :> obj))>] ?ColorScale: Colorscale * [<Optional; DefaultParameterValue ((null :> obj))>] ?ShowScale: bool * [<Optional; DefaultParameterValue ((null :> obj))>] ?ReverseScale: bool * [<Optional; DefaultParameterValue ((null :> obj))>] ?Transpose: bool * [<Optional; DefaultParameterValue ((null :> obj))>] ?ContourLineColor: Color * [<Optional; DefaultParameterValue ((null :> obj))>] ?ContourLineDash: DrawingStyle * [<Optional; DefaultParameterValue ((null :> obj))>] ?ContourLineSmoothing: float * [<Optional; DefaultParameterValue ((null :> obj))>] ?ContourLine: Line * [<Optional; DefaultParameterValue ((null :> obj))>] ?ContoursColoring: ContourColoring * [<Optional; DefaultParameterValue ((null :> obj))>] ?ContoursOperation: ConstraintOperation * [<Optional; DefaultParameterValue ((null :> obj))>] ?ContoursType: ContourType * [<Optional; DefaultParameterValue ((null :> obj))>] ?ShowContourLabels: bool * [<Optional; DefaultParameterValue ((null :> obj))>] ?ContourLabelFont: Font * [<Optional; DefaultParameterValue ((null :> obj))>] ?Contours: Contours * [<Optional; DefaultParameterValue ((null :> obj))>] ?FillColor: Color * [<Optional; DefaultParameterValue ((null :> obj))>] ?NContours: int * [<Optional; DefaultParameterValue ((true :> obj))>] ?UseDefaults: bool -> GenericChart (requires 'a1 :> IConvertible and 'a4 :> IConvertible) static member Funnel: x: #IConvertible seq * y: #IConvertible seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?Name: string * [<Optional; DefaultParameterValue ((null :> obj))>] ?ShowLegend: bool * [<Optional; DefaultParameterValue ((null :> obj))>] ?Opacity: float * [<Optional; DefaultParameterValue ((null :> obj))>] ?Width: float * [<Optional; DefaultParameterValue ((null :> obj))>] ?Offset: float * [<Optional; DefaultParameterValue ((null :> obj))>] ?Text: 'a2 * [<Optional; DefaultParameterValue ((null :> obj))>] ?MultiText: 'a2 seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?TextPosition: TextPosition * [<Optional; DefaultParameterValue ((null :> obj))>] ?MultiTextPosition: TextPosition seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?Orientation: Orientation * [<Optional; DefaultParameterValue ((null :> obj))>] ?AlignmentGroup: string * [<Optional; DefaultParameterValue ((null :> obj))>] ?OffsetGroup: string * [<Optional; DefaultParameterValue ((null :> obj))>] ?MarkerColor: Color * [<Optional; DefaultParameterValue ((null :> obj))>] ?MarkerOutline: Line * [<Optional; DefaultParameterValue ((null :> obj))>] ?Marker: Marker * [<Optional; DefaultParameterValue ((null :> obj))>] ?TextInfo: TextInfo * [<Optional; DefaultParameterValue ((null :> obj))>] ?ConnectorLineColor: Color * [<Optional; DefaultParameterValue ((null :> obj))>] ?ConnectorLineStyle: DrawingStyle * [<Optional; DefaultParameterValue ((null :> obj))>] ?ConnectorFillColor: Color * [<Optional; DefaultParameterValue ((null :> obj))>] ?ConnectorLine: Line * [<Optional; DefaultParameterValue ((null :> obj))>] ?Connector: FunnelConnector * [<Optional; DefaultParameterValue ((null :> obj))>] ?InsideTextFont: Font * [<Optional; DefaultParameterValue ((null :> obj))>] ?OutsideTextFont: Font * [<Optional; DefaultParameterValue ((true :> obj))>] ?UseDefaults: bool -> GenericChart (requires 'a2 :> IConvertible) static member Heatmap: zData: #('a1 seq) seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?Name: string * [<Optional; DefaultParameterValue ((null :> obj))>] ?ShowLegend: bool * [<Optional; DefaultParameterValue ((null :> obj))>] ?Opacity: float * [<Optional; DefaultParameterValue ((null :> obj))>] ?X: #IConvertible seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?XGap: int * [<Optional; DefaultParameterValue ((null :> obj))>] ?Y: #IConvertible seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?YGap: int * [<Optional; DefaultParameterValue ((null :> obj))>] ?Text: 'a4 * [<Optional; DefaultParameterValue ((null :> obj))>] ?MultiText: 'a4 seq * [<Optional; DefaultParameterValue ((null :> obj))>] ?ColorBar: ColorBar * [<Optional; DefaultParameterValue ((null :> obj))>] ?ColorScale: Colorscale * [<Optional; DefaultParameterValue ((null :> obj))>] ?ShowScale: bool * [<Optional; DefaultParameterValue ((null :> obj))>] ?ReverseScale: bool * [<Optional; DefaultParameterValue ((null :> obj))>] ?ZSmooth: SmoothAlg * [<Optional; DefaultParameterValue ((null :> obj))>] ?Transpose: bool * [<Optional; DefaultParameterValue ((false :> obj))>] ?UseWebGL: bool * [<Optional; DefaultParameterValue ((false :> obj))>] ?ReverseYAxis: bool * [<Optional; DefaultParameterValue ((true :> obj))>] ?UseDefaults: bool -> GenericChart (requires 'a1 :> IConvertible and 'a4 :> IConvertible) + 1 overload ...
static member Chart.Histogram: data: #System.IConvertible seq * orientation: StyleParam.Orientation * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?Name: string * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?ShowLegend: bool * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?Opacity: float * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?Text: 'a1 * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?MultiText: 'a1 seq * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?HistFunc: StyleParam.HistFunc * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?HistNorm: StyleParam.HistNorm * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?AlignmentGroup: string * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?OffsetGroup: string * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?NBinsX: int * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?NBinsY: int * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?BinGroup: string * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?XBins: TraceObjects.Bins * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?YBins: TraceObjects.Bins * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?MarkerColor: Color * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?Marker: TraceObjects.Marker * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?Line: Line * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?XError: TraceObjects.Error * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?YError: TraceObjects.Error * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?Cumulative: TraceObjects.Cumulative * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?HoverLabel: LayoutObjects.Hoverlabel * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((true :> obj))>] ?UseDefaults: bool -> GenericChart.GenericChart (requires 'a1 :> System.IConvertible)
static member Chart.Histogram: [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?X: #System.IConvertible seq * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?Y: #System.IConvertible seq * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?Orientation: StyleParam.Orientation * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?Name: string * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?ShowLegend: bool * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?Opacity: float * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?Text: 'c * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?MultiText: 'c seq * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?HistFunc: StyleParam.HistFunc * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?HistNorm: StyleParam.HistNorm * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?AlignmentGroup: string * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?OffsetGroup: string * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?NBinsX: int * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?NBinsY: int * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?BinGroup: string * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?XBins: TraceObjects.Bins * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?YBins: TraceObjects.Bins * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?MarkerColor: Color * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?Marker: TraceObjects.Marker * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?Line: Line * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?XError: TraceObjects.Error * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?YError: TraceObjects.Error * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?Cumulative: TraceObjects.Cumulative * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?HoverLabel: LayoutObjects.Hoverlabel * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((true :> obj))>] ?UseDefaults: bool -> GenericChart.GenericChart (requires 'c :> System.IConvertible)
static member Chart.withXAxisStyle: [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?TitleText: string * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?TitleFont: Font * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?TitleStandoff: int * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?Title: Title * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?Color: Color * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?AxisType: StyleParam.AxisType * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?MinMax: (#System.IConvertible * #System.IConvertible) * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?Mirror: StyleParam.Mirror * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?ShowSpikes: bool * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?SpikeColor: Color * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?SpikeThickness: int * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?ShowLine: bool * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?LineColor: Color * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?ShowGrid: bool * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?GridColor: Color * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?ZeroLine: bool * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?ZeroLineColor: Color * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?Anchor: StyleParam.LinearAxisId * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?Side: StyleParam.Side * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?Overlaying: StyleParam.LinearAxisId * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?Domain: (float * float) * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?Position: float * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?CategoryOrder: StyleParam.CategoryOrder * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?CategoryArray: #System.IConvertible seq * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?RangeSlider: LayoutObjects.RangeSlider * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?RangeSelector: LayoutObjects.RangeSelector * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?BackgroundColor: Color * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?ShowBackground: bool * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?Id: StyleParam.SubPlotId -> (GenericChart.GenericChart -> GenericChart.GenericChart)
static member Chart.withYAxisStyle: [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?TitleText: string * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?TitleFont: Font * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?TitleStandoff: int * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?Title: Title * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?Color: Color * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?AxisType: StyleParam.AxisType * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?MinMax: (#System.IConvertible * #System.IConvertible) * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?Mirror: StyleParam.Mirror * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?ShowSpikes: bool * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?SpikeColor: Color * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?SpikeThickness: int * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?ShowLine: bool * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?LineColor: Color * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?ShowGrid: bool * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?GridColor: Color * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?ZeroLine: bool * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?ZeroLineColor: Color * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?Anchor: StyleParam.LinearAxisId * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?Side: StyleParam.Side * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?Overlaying: StyleParam.LinearAxisId * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?Domain: (float * float) * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?Position: float * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?CategoryOrder: StyleParam.CategoryOrder * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?CategoryArray: #System.IConvertible seq * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?RangeSlider: LayoutObjects.RangeSlider * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?RangeSelector: LayoutObjects.RangeSelector * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?BackgroundColor: Color * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?ShowBackground: bool * [<System.Runtime.InteropServices.Optional; System.Runtime.InteropServices.DefaultParameterValue ((null :> obj))>] ?Id: StyleParam.SubPlotId -> (GenericChart.GenericChart -> GenericChart.GenericChart)
module GenericChart from Plotly.NET
<summary> Module to represent a GenericChart </summary>
val toChartHTML: gChart: GenericChart.GenericChart -> string
<summary> Converts a GenericChart to it HTML representation. The div layer has a default size of 600 if not specified otherwise. </summary>

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