SRATools (BioFSharp) | BioFSharp

SRATools Module

Namespace: BioFSharp.BioContainers
Assembly: BioFSharp.BioContainers.dll

Types

Type	Description
FasterQDumpParams	DSL for command line arguments for the fasterq-dump tool contained in the SRA Toolkit
PrefetchForceOptions
PrefetchParams
PrefetchTransportOptions
SplitOptions

Functions and values

Function or value	Description
`runFasterQDumpOfAccession bcContext opt accession` Full Usage: `runFasterQDumpOfAccession bcContext opt accession` Parameters: bcContext : `BcContext` opt : `FasterQDumpParams list` accession : `string`	bcContext : `BcContext` opt : `FasterQDumpParams list` accession : `string`
`runFasterQDumpOfAccessionAsync bcContext opt accession` Full Usage: `runFasterQDumpOfAccessionAsync bcContext opt accession` Parameters: bcContext : `BcContext` opt : `FasterQDumpParams list` accession : `string` Returns: `Async<unit>`	bcContext : `BcContext` opt : `FasterQDumpParams list` accession : `string` Returns: `Async<unit>`
`runFasterQDumpOfFile bcContext opt accession` Full Usage: `runFasterQDumpOfFile bcContext opt accession` Parameters: bcContext : `BcContext` opt : `FasterQDumpParams list` accession : `string`	bcContext : `BcContext` opt : `FasterQDumpParams list` accession : `string`
`runFasterQDumpOfFileAsync bcContext opt sraPath` Full Usage: `runFasterQDumpOfFileAsync bcContext opt sraPath` Parameters: bcContext : `BcContext` opt : `FasterQDumpParams list` sraPath : `string` Returns: `Async<unit>`	bcContext : `BcContext` opt : `FasterQDumpParams list` sraPath : `string` Returns: `Async<unit>`
`runPrefetchAsync bcContext opt accession` Full Usage: `runPrefetchAsync bcContext opt accession` Parameters: bcContext : `BcContext` opt : `PrefetchParams list` accession : `string` Returns: `Async<unit>`	bcContext : `BcContext` opt : `PrefetchParams list` accession : `string` Returns: `Async<unit>`