FastA (BioFSharp) | BioFSharp

FastA Module

Namespace: BioFSharp.IO
Assembly: BioFSharp.IO.dll

Types

Type	Description
FastaItem<'a>	Fasta item contains header and sequence

Functions and values

Function or value	Description
`createFastaItem header sequence` Full Usage: `createFastaItem header sequence` Parameters: header : `string` sequence : `'a` Returns: `FastaItem<'a>`	Creates with header line and sequence. header : `string` sequence : `'a` Returns: `FastaItem<'a>`
`fromFile converter filePath` Full Usage: `fromFile converter filePath` Parameters: converter : `char seq -> 'a` filePath : `string` Returns: `FastaItem<'a> seq`	Reads FastaItem from file. Converter determines type of sequence by converting seq -> type converter : `char seq -> 'a` filePath : `string` Returns: `FastaItem<'a> seq`
`fromFileEnumerator converter fileEnumerator` Full Usage: `fromFileEnumerator converter fileEnumerator` Parameters: converter : `char seq -> 'a` fileEnumerator : `string seq` Returns: `FastaItem<'a> seq`	Reads FastaItem from file. Converter determines type of sequence by converting seq -> type converter : `char seq -> 'a` fileEnumerator : `string seq` Returns: `FastaItem<'a> seq`
`fromGzipFile converter filePath` Full Usage: `fromGzipFile converter filePath` Parameters: converter : `char seq -> 'a` filePath : `string` Returns: `FastaItem<'a> seq`	Reads FastaItem from gzFile. Converter determines type of sequence by converting seq -> type converter : `char seq -> 'a` filePath : `string` Returns: `FastaItem<'a> seq`
`toString toString data` Full Usage: `toString toString data` Parameters: toString : `'T -> char` data : `FastaItem<'a> seq` Returns: `string seq`	Converts FastaItem to string. Converter determines type of sequence by converting type -> char toString : `'T -> char` data : `FastaItem<'a> seq` Returns: `string seq`
`toTaggedSequence fsa` Full Usage: `toTaggedSequence fsa` Parameters: fsa : `FastaItem<'S>` Returns: `TaggedSequence<string, 'a>`	fsa : `FastaItem<'S>` Returns: `TaggedSequence<string, 'a>`
`write toString filePath data` Full Usage: `write toString filePath data` Parameters: toString : `'T -> char` filePath : `string` data : `FastaItem<'a> seq`	Writes FastaItem to file. Converter determines type of sequence by converting type -> char. If file already exists the data is overwritten. toString : `'T -> char` filePath : `string` data : `FastaItem<'a> seq`
`writeAndAppend toString filePath data` Full Usage: `writeAndAppend toString filePath data` Parameters: toString : `'T -> char` filePath : `string` data : `FastaItem<'a> seq`	Writes FastaItem to file. Converter determines type of sequence by converting type -> char. If file already exists the data is appended. toString : `'T -> char` filePath : `string` data : `FastaItem<'a> seq`
`writeToStream toString stream data` Full Usage: `writeToStream toString stream data` Parameters: toString : `'T -> char` stream : `Stream` data : `FastaItem<'a> seq`	Writes FastaItem to stream. Converter determines type of sequence by converting type -> char The passed stream stays open and is not disposed after writing to it. If you want to reuse the stream (e.g. you are not writing to a file stream but a memory stream that gets used afterwards) you have to reset the position with `stream.Seek(0L, SeekOrigin.Begin)` toString : `'T -> char` stream : `Stream` data : `FastaItem<'a> seq`