FastQ (BioFSharp) | BioFSharp

FastQ Module

Namespace: BioFSharp.IO
Assembly: BioFSharp.IO.dll

Types

Type	Description
FastqItem<'a, 'b>	FastqItem record contains header, sequence, qualityheader, qualitysequence of one entry

Functions and values

Function or value	Description
`createFastqItem header sequence qualityHeader qualitySequence` Full Usage: `createFastqItem header sequence qualityHeader qualitySequence` Parameters: header : `string` sequence : `'a` qualityHeader : `string` qualitySequence : `'b` Returns: `FastqItem<'a, 'b>`	Creates FastqItem with header line, sequence, qualityHeader and qualitySequence header : `string` sequence : `'a` qualityHeader : `string` qualitySequence : `'b` Returns: `FastqItem<'a, 'b>`
`fromFile converter qualityConverter filePath` Full Usage: `fromFile converter qualityConverter filePath` Parameters: converter : `string -> 'a` qualityConverter : `string -> 'b` filePath : `string` Returns: `FastqItem<'a, 'b> seq`	Reads FastqItem from FastQ format file. Converter and qualityConverter determines type of sequence by converting seq -> type converter : `string -> 'a` qualityConverter : `string -> 'b` filePath : `string` Returns: `FastqItem<'a, 'b> seq`
`fromFileEnumerator converter qualityConverter fileEnumerator` Full Usage: `fromFileEnumerator converter qualityConverter fileEnumerator` Parameters: converter : `string -> 'a` qualityConverter : `string -> 'b` fileEnumerator : `string seq` Returns: `FastqItem<'a, 'b> seq`	Maps each lines from an entry to FastqItem converter : `string -> 'a` qualityConverter : `string -> 'b` fileEnumerator : `string seq` Returns: `FastqItem<'a, 'b> seq`
`fromGzipFile converter qualityConverter filePath` Full Usage: `fromGzipFile converter qualityConverter filePath` Parameters: converter : `string -> 'a` qualityConverter : `string -> 'b` filePath : `string` Returns: `FastqItem<'a, 'b> seq`	Reads FastqItem from GZip format file. Converter and qualityConverter determines type of sequence by converting seq -> type converter : `string -> 'a` qualityConverter : `string -> 'b` filePath : `string` Returns: `FastqItem<'a, 'b> seq`