GenBank (BioFSharp) | BioFSharp

GenBank Module

Namespace: BioFSharp.IO
Assembly: BioFSharp.IO.dll

functions for reading and writing GenBank files

Types and nested modules

Type/Module	Description
OriginConverters	contains prebuilt converters for origin sequences in a gb file for both reading and writing
Read	functions for parsing a GenBank file.
Write	Functions for writing a GenBank file
Feature	Represents a single feature from the FEATURES section of a GenBank file. Features can contain Information about genes and gene products, as well as regions of biological significance reported in the sequence
FeatureQualifier	Represents a single feature Qualifier and its value from the FEATURES section of a Genbank file. Features can contain Information about genes and gene products, as well as regions of biological significance reported in the sequence
GenBankItem<'a>	Represents any Item a GenBank file can contain as a union case. The result of parsing a genBank file will be a dictionary containing this type.

Functions and values

Function or value	Description
`createFeature t bs qual` Full Usage: `createFeature t bs qual` Parameters: t : `string` bs : `string` qual : `FeatureQualifier list` Returns: `Feature`	t : `string` bs : `string` qual : `FeatureQualifier list` Returns: `Feature`
`createFeatureQualifier name value` Full Usage: `createFeatureQualifier name value` Parameters: name : `string` value : `string` Returns: `FeatureQualifier`	name : `string` value : `string` Returns: `FeatureQualifier`
`getFeatures gb` Full Usage: `getFeatures gb` Parameters: gb : `Dictionary<string, GenBankItem<'a>>` Returns: `Feature list`	Returns all features of a GenBank file representation gb : `Dictionary<string, GenBankItem<'a>>` Returns: `Feature list`
`getFeaturesWithType featureType gb` Full Usage: `getFeaturesWithType featureType gb` Parameters: featureType : `string` gb : `Dictionary<string, GenBankItem<'a>>` Returns: `Feature list`	Returns all features of a specific type of a GenBank file representation featureType : `string` gb : `Dictionary<string, GenBankItem<'a>>` Returns: `Feature list`
`getOrigin gb` Full Usage: `getOrigin gb` Parameters: gb : `Dictionary<string, GenBankItem<'a>>` Returns: `'a`	Returns the Origin of a GenBank file representation gb : `Dictionary<string, GenBankItem<'a>>` Returns: `'a`
`getReferences gb` Full Usage: `getReferences gb` Parameters: gb : `Dictionary<string, GenBankItem<'a>>` Returns: `(string * string) list list`	Returns all references of a GenBank file representation gb : `Dictionary<string, GenBankItem<'a>>` Returns: `(string * string) list list`
`getValues gb` Full Usage: `getValues gb` Parameters: gb : `Dictionary<string, GenBankItem<'a>>` Returns: `(string * string) list`	Returns all Values of the meta section of a Genbank file representation gb : `Dictionary<string, GenBankItem<'a>>` Returns: `(string * string) list`
`tryGetItem key gb` Full Usage: `tryGetItem key gb` Parameters: key : `string` gb : `Dictionary<string, GenBankItem<'a>>` Returns: `GenBankItem<'a> option`	Returns a GenBank item at the specified key, if it exists in the dictionary key : `string` gb : `Dictionary<string, GenBankItem<'a>>` Returns: `GenBankItem<'a> option`