Obo (BioFSharp) | BioFSharp

Obo Module

Namespace: BioFSharp.IO
Assembly: BioFSharp.IO.dll

Functions for par

Types

Type	Description
DBXref
OboTerm	obo term record type
OboTermDef
TermSynonym
TermSynonymScope

Functions and values

Function or value	Description
`createOboTerm id name isAnonymous altIds definition comment subsets synonyms xrefs isA intersectionOf unionOf disjointFrom relationships isObsolete replacedby consider propertyValues builtIn createdBy creationDate` Full Usage: `createOboTerm id name isAnonymous altIds definition comment subsets synonyms xrefs isA intersectionOf unionOf disjointFrom relationships isObsolete replacedby consider propertyValues builtIn createdBy creationDate` Parameters: id : `string` name : `string` isAnonymous : `bool` altIds : `string list` definition : `string` comment : `string` subsets : `string list` synonyms : `TermSynonym list` xrefs : `DBXref list` isA : `string list` intersectionOf : `string list` unionOf : `string list` disjointFrom : `string list` relationships : `string list` isObsolete : `bool` replacedby : `string list` consider : `string list` propertyValues : `string list` builtIn : `bool` createdBy : `string` creationDate : `string` Returns: `OboTerm`	Creates an obo term record id : `string` name : `string` isAnonymous : `bool` altIds : `string list` definition : `string` comment : `string` subsets : `string list` synonyms : `TermSynonym list` xrefs : `DBXref list` isA : `string list` intersectionOf : `string list` unionOf : `string list` disjointFrom : `string list` relationships : `string list` isObsolete : `bool` replacedby : `string list` consider : `string list` propertyValues : `string list` builtIn : `bool` createdBy : `string` creationDate : `string` Returns: `OboTerm`
`createOboTermDef id name isTransitive isCyclic` Full Usage: `createOboTermDef id name isTransitive isCyclic` Parameters: id : `string` name : `string` isTransitive : `string` isCyclic : `string` Returns: `OboTermDef`	id : `string` name : `string` isTransitive : `string` isCyclic : `string` Returns: `OboTermDef`
`parseDBXref v` Full Usage: `parseDBXref v` Parameters: v : `string` Returns: `DBXref`	v : `string` Returns: `DBXref`
`parseOboTerms verbose input` Full Usage: `parseOboTerms verbose input` Parameters: verbose : `bool` input : `string seq` Returns: `OboTerm seq`	Parse Obo Terms [Term] from seq verbose : `bool` input : `string seq` Returns: `OboTerm seq`
`parseSynonym scopeFromDeprecatedTag line v` Full Usage: `parseSynonym scopeFromDeprecatedTag line v` Parameters: scopeFromDeprecatedTag : `TermSynonymScope option` line : `int` v : `string` Returns: `TermSynonym`	scopeFromDeprecatedTag : `TermSynonymScope option` line : `int` v : `string` Returns: `TermSynonym`