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RNASeq Module

Contains types and functions needed for RNA-Seq normalization

Types

Type Description

NormalizationMethod

NormalizedCounts

Type with GeneID, normalized data and method of normalization

RNASeqInput

Input type for RNA-Seq normalization

Functions and values

Function or value Description

rpkms idLengthAndCounts

Full Usage: rpkms idLengthAndCounts

Parameters:
Returns: NormalizedCounts seq

Returns RPKM normalized data

idLengthAndCounts : RNASeqInput seq
Returns: NormalizedCounts seq

tpms idLengthAndCounts

Full Usage: tpms idLengthAndCounts

Parameters:
Returns: NormalizedCounts seq

Returns TPM normalized data

idLengthAndCounts : RNASeqInput seq
Returns: NormalizedCounts seq

Type something to start searching.