AminoAcidSymbols (BioFSharp)

AminoAcidSymbols Module

Namespace: BioFSharp
Assembly: BioFSharp.dll

Contains the AminoAcidSymbol type and its according functions. The AminoAcidSymbol type is a lightweight, efficient presentation of amino acids

Types

Type	Description
AminoAcidSymbol

Functions and values

Function or value	Description
`AminoAcidSetHydrophobic` Full Usage: `AminoAcidSetHydrophobic` Returns: `Set<AminoAcidSymbol>`	Set of all AminoAcids with hydrophobic sidechain Returns: `Set<AminoAcidSymbol>`
`AminoAcidSetPolar` Full Usage: `AminoAcidSetPolar` Returns: `Set<AminoAcidSymbol>`	Set of all AminoAcids with polar sidechain Returns: `Set<AminoAcidSymbol>`
`AminoSymbolSetAmbiguity` Full Usage: `AminoSymbolSetAmbiguity` Returns: `Set<AminoAcidSymbol>`	Returns: `Set<AminoAcidSymbol>`
`AminoSymbolSetGapTer` Full Usage: `AminoSymbolSetGapTer` Returns: `Set<AminoAcidSymbol>`	Set containing the Gap and the Terminator AminoAcidSymbols Returns: `Set<AminoAcidSymbol>`
`AminoSymbolSetNegCharged` Full Usage: `AminoSymbolSetNegCharged` Returns: `Set<AminoAcidSymbol>`	Set of all AminoAcidSymbols with acidic sidechain Returns: `Set<AminoAcidSymbol>`
`AminoSymbolSetPosCharged` Full Usage: `AminoSymbolSetPosCharged` Returns: `Set<AminoAcidSymbol>`	Set of all AminoAcidSymbols with basic sidechain Returns: `Set<AminoAcidSymbol>`
`AminoSymbolSetStandard` Full Usage: `AminoSymbolSetStandard` Returns: `Set<AminoAcidSymbol>`	Set of the 20 standard amino acids Returns: `Set<AminoAcidSymbol>`
`aminoAcidSymbol a` Full Usage: `aminoAcidSymbol a` Parameters: a : `^a` Returns: `AminoAcidSymbol` Modifiers: inline Type parameters: ^a	Maps input to AminoAcidSymbol if possible a : `^a` Returns: `AminoAcidSymbol`
`averageMass aa` Full Usage: `averageMass aa` Parameters: aa : `AminoAcidSymbol` Returns: `float`	Returns the average mass of AminoAcidSymbol (without H20) aa : `AminoAcidSymbol` Returns: `float`
`formula aa` Full Usage: `formula aa` Parameters: aa : `AminoAcidSymbol` Returns: `Formula`	Returns AminoAcidSymbol formulas minus H20 aa : `AminoAcidSymbol` Returns: `Formula`
`initAverageMassWithMemP` Full Usage: `initAverageMassWithMemP` Returns: `AminoAcidSymbol -> float`	Returns a function to calculate the average mass of a bio item with memoization Returns: `AminoAcidSymbol -> float`
`initMonoisoMassWithMemP` Full Usage: `initMonoisoMassWithMemP` Returns: `AminoAcidSymbol -> float`	Returns a function to calculate the monoisotopic mass of a bio item with memoization Returns: `AminoAcidSymbol -> float`
`isCharged aa` Full Usage: `isCharged aa` Parameters: aa : `AminoAcidSymbol` Returns: `bool`	Returns true, if the AminoAcidSymbol has a basic or acidic side chain aa : `AminoAcidSymbol` Returns: `bool`
`isGap aa` Full Usage: `isGap aa` Parameters: aa : `AminoAcidSymbol` Returns: `bool`	Returns true if AminoAcidSymbol represents a sequence gap aa : `AminoAcidSymbol` Returns: `bool`
`isHydrophobic aa` Full Usage: `isHydrophobic aa` Parameters: aa : `AminoAcidSymbol` Returns: `bool`	Returns true, if the AminoAcidSymbol has a hydrophobic side chain aa : `AminoAcidSymbol` Returns: `bool`
`isNegCharged aa` Full Usage: `isNegCharged aa` Parameters: aa : `AminoAcidSymbol` Returns: `bool`	Returns true, if the AminoAcidSymbol has an acidic side chain aa : `AminoAcidSymbol` Returns: `bool`
`isPolar aa` Full Usage: `isPolar aa` Parameters: aa : `AminoAcidSymbol` Returns: `bool`	Returns true, if the AminoAcidSymbol has a polar side chain aa : `AminoAcidSymbol` Returns: `bool`
`isPosCharged aa` Full Usage: `isPosCharged aa` Parameters: aa : `AminoAcidSymbol` Returns: `bool`	Returns true, if the AminoAcidSymbol has a basic side chain aa : `AminoAcidSymbol` Returns: `bool`
`isTerminator aa` Full Usage: `isTerminator aa` Parameters: aa : `AminoAcidSymbol` Returns: `bool`	Returns true if AminoAcidSymbol represents a sequence terminator aa : `AminoAcidSymbol` Returns: `bool`
`monoisoMass aa` Full Usage: `monoisoMass aa` Parameters: aa : `AminoAcidSymbol` Returns: `float`	Returns the monoisotopic mass of AminoAcidSymbol (without H20) aa : `AminoAcidSymbol` Returns: `float`
`name aa` Full Usage: `name aa` Parameters: aa : `AminoAcidSymbol` Returns: `string`	Returns the name of AminoAcidSymbol aa : `AminoAcidSymbol` Returns: `string`
`parseChar c` Full Usage: `parseChar c` Parameters: c : `char` Returns: `NcbiParsingType * AminoAcidSymbol option` Modifiers: inline	Returns the corresponding AminoAcidSymbol for the input character c : `char` Returns: `NcbiParsingType * AminoAcidSymbol option`
`symbol aa` Full Usage: `symbol aa` Parameters: aa : `AminoAcidSymbol` Returns: `char`	Returns the symbol of AminoAcidSymbol aa : `AminoAcidSymbol` Returns: `char`

Active patterns

Active pattern Description

Active pattern	Description
`(\|Field\|_\|) field x` Full Usage: `(\|Field\|_\|) field x` Parameters: field : `'a` x : `'a` Returns: `unit option`	field : `'a` x : `'a` Returns: `unit option`


                
                  
                    
                      (|Field|_|) field x

Full Usage: (|Field|_|) field x

Parameters:

field : 'a

x : 'a

Returns: unit option

field : 'a
x : 'a

Returns: unit option