BlastP (BioFSharp)

BlastP Module

Namespace: BioFSharp.BioContainers
Assembly: BioFSharp.BioContainers.dll
Parent Module: Blast

DSL for blastp programs The blastp application searches a protein sequence against protein subject sequences or a protein database. Three different tasks are supported: 1.) “blastp”, for standard protein-protein comparisons 2.) “blastp-short”, optimized for query sequences shorter than 30 residues 3.) “blastp-fast”, a faster version that uses a larger word-size

Types

Type	Description
BlastPFastParameters	use this type to specify specific and generic command line parameters for the blastp blastp-fast task like this: let myParams = [ BlastPFastParameters.CommonOptions [...] BlastPFastParameters.SpecificOptions [...] ]
BlastPFastParams	DSL fo the blastp 'blastp-fast' task command line options blastp-fast is a faster version that uses a larger word-size
BlastPParameters	use this type to specify specific and generic command line parameters for the blastp task like this: let myParams = [ BlastPParameters.CommonOptions [...] BlastPParameters.SpecificOptions [...] ]
BlastPParams	DSL fo the blastp 'blastp' task command line options blastp is used for standard protein-protein comparisons
BlastPShortParameters	use this type to specify specific and generic command line parameters for the blastp blastp-short task like this: let myParams = [ BlastPShortParameters.CommonOptions [...] BlastPShortParameters.SpecificOptions [...] ]
BlastPShortParams	DSL fo the blastp 'blastp-short' task command line options blastp-short is optimized for query sequences shorter than 30 residues

Functions and values

Function or value	Description
`BlastP.runBlastP bcContext opt` Full Usage: `BlastP.runBlastP bcContext opt` Parameters: bcContext : `BcContext` opt : `BlastPParameters list`	run `blastn -task blastn-short` in the specified container context with the given commands bcContext : `BcContext` opt : `BlastPParameters list`
`BlastP.runBlastPAsync bcContext opt` Full Usage: `BlastP.runBlastPAsync bcContext opt` Parameters: bcContext : `BcContext` opt : `BlastPParameters list` Returns: `Async<unit>`	returns an asynchronous computation that will run `blastp -task blastp` in the specified container context with the given commands bcContext : `BcContext` opt : `BlastPParameters list` Returns: `Async<unit>`
`BlastP.runBlastPFast bcContext opt` Full Usage: `BlastP.runBlastPFast bcContext opt` Parameters: bcContext : `BcContext` opt : `BlastPFastParameters list`	run `blastp -task blastp-short` in the specified container context with the given commands bcContext : `BcContext` opt : `BlastPFastParameters list`
`BlastP.runBlastPFastAsync bcContext opt` Full Usage: `BlastP.runBlastPFastAsync bcContext opt` Parameters: bcContext : `BcContext` opt : `BlastPFastParameters list` Returns: `Async<unit>`	returns an asynchronous computation that will run `blastp -task blastp-fast` in the specified container context with the given commands bcContext : `BcContext` opt : `BlastPFastParameters list` Returns: `Async<unit>`
`BlastP.runBlastPShort bcContext opt` Full Usage: `BlastP.runBlastPShort bcContext opt` Parameters: bcContext : `BcContext` opt : `BlastPShortParameters list`	returns an asynchronous computation that will run `blastp -task blastp-short` in the specified container context with the given commands bcContext : `BcContext` opt : `BlastPShortParameters list`
`BlastP.runBlastPShortAsync bcContext opt` Full Usage: `BlastP.runBlastPShortAsync bcContext opt` Parameters: bcContext : `BcContext` opt : `BlastPShortParameters list` Returns: `Async<unit>`	returns an asynchronous computation that will run `blastp -task blastp-short` in the specified container context with the given commands bcContext : `BcContext` opt : `BlastPShortParameters list` Returns: `Async<unit>`