IOOptions (BioFSharp)

IOOptions Type

Namespace: BioFSharp.BioContainers
Assembly: BioFSharp.BioContainers.dll
Parent Module: FastP
Base Type: obj
All Interfaces: IEquatable<IOOptions> , IStructuralEquatable , IComparable<IOOptions> , IComparable , IStructuralComparable

Union cases

Union case	Description
`DontOverwrite` Full Usage: `DontOverwrite`	don't overwrite existing files. Overwriting is allowed by default.
`Input1 string` Full Usage: `Input1 string` Parameters: Item : `string`	read1 input file name Item : `string`
`Input2 string` Full Usage: `Input2 string` Parameters: Item : `string`	read1 output file name Item : `string`
`InterleavedInput` Full Usage: `InterleavedInput`	indicate that Input1 is an interleaved FASTQ which contains both read1 and read2. Disabled by default.
`Output1 string` Full Usage: `Output1 string` Parameters: Item : `string`	read2 input file name Item : `string`
`Output2 string` Full Usage: `Output2 string` Parameters: Item : `string`	read2 output file name Item : `string`
`OutputCompressionLevel int` Full Usage: `OutputCompressionLevel int` Parameters: Item : `int`	compression level for gzip output (1 ~ 9). 1 is fastest, 9 is smallest, default is 4. Item : `int`
`Phred64` Full Usage: `Phred64`	indicate the input is using phred64 scoring (it'll be converted to phred33, so the output will still be phred33)
`ReadsToProcess int` Full Usage: `ReadsToProcess int` Parameters: Item : `int`	specify how many reads/pairs to be processed. Default 0 means process all reads. Item : `int`
`STDIN` Full Usage: `STDIN`	input from STDIN. If the STDIN is interleaved paired-end FASTQ, please also add --interleaved_in.
`STDOUT` Full Usage: `STDOUT`	output passing-filters reads to STDOUT. This option will result in interleaved FASTQ output for paired-end input. Disabled by default.

Static members

Static member Description

Static member	Description
`IOOptions.makeCmd` Full Usage: `IOOptions.makeCmd` Returns: `IOOptions -> string`	Returns: `IOOptions -> string`
`IOOptions.makeCmdWith m` Full Usage: `IOOptions.makeCmdWith m` Parameters: m : `MountInfo` Returns: `IOOptions -> string`	m : `MountInfo` Returns: `IOOptions -> string`


                
                  
                    
                      IOOptions.makeCmd

Full Usage: IOOptions.makeCmd

Returns: IOOptions -> string

Returns: IOOptions -> string


                
                  
                    
                      IOOptions.makeCmdWith m

Full Usage: IOOptions.makeCmdWith m

Parameters:

m : MountInfo

Returns: IOOptions -> string

m : MountInfo

Returns: IOOptions -> string