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QualityCuttingOptions Type

Union cases

Union case Description

CutMeanQuality int

Full Usage: CutMeanQuality int

Parameters:
    Item : int

the bases in the sliding window with mean quality below cutting_quality will be cut, default is Q20.

Item : int

CutWindowSize int

Full Usage: CutWindowSize int

Parameters:
    Item : int

the size of the sliding window for sliding window trimming, default is 4.

Item : int

FivePrimeQualityCut

Full Usage: FivePrimeQualityCut

enable per read cutting by quality in front (5'), default is disabled (WARNING: this will interfere deduplication for both PE/SE data).

ThreePrimeQualityCut

Full Usage: ThreePrimeQualityCut

enable per read cutting by quality in tail (3'), default is disabled (WARNING: this will interfere deduplication for SE data).

Static members

Static member Description

QualityCuttingOptions.makeCmd

Full Usage: QualityCuttingOptions.makeCmd

Returns: QualityCuttingOptions -> string
Returns: QualityCuttingOptions -> string

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