QualityCuttingOptions (BioFSharp)

QualityCuttingOptions Type

Namespace: BioFSharp.BioContainers
Assembly: BioFSharp.BioContainers.dll
Parent Module: FastP
Base Type: obj
All Interfaces: IEquatable<QualityCuttingOptions> , IStructuralEquatable , IComparable<QualityCuttingOptions> , IComparable , IStructuralComparable

Union case	Description
`CutMeanQuality int` Full Usage: `CutMeanQuality int` Parameters: Item : `int`	the bases in the sliding window with mean quality below cutting_quality will be cut, default is Q20. Item : `int`
`CutWindowSize int` Full Usage: `CutWindowSize int` Parameters: Item : `int`	the size of the sliding window for sliding window trimming, default is 4. Item : `int`
`FivePrimeQualityCut` Full Usage: `FivePrimeQualityCut`	enable per read cutting by quality in front (5'), default is disabled (WARNING: this will interfere deduplication for both PE/SE data).
`ThreePrimeQualityCut` Full Usage: `ThreePrimeQualityCut`	enable per read cutting by quality in tail (3'), default is disabled (WARNING: this will interfere deduplication for SE data).

Static member	Description
`QualityCuttingOptions.makeCmd` Full Usage: `QualityCuttingOptions.makeCmd` Returns: `QualityCuttingOptions -> string`	Returns: `QualityCuttingOptions -> string`