QualityFilteringOptions (BioFSharp)

QualityFilteringOptions Type

Namespace: BioFSharp.BioContainers
Assembly: BioFSharp.BioContainers.dll
Parent Module: FastP
Base Type: obj
All Interfaces: IEquatable<QualityFilteringOptions> , IStructuralEquatable , IComparable<QualityFilteringOptions> , IComparable , IStructuralComparable

Union case	Description
`BaseQualityThreshold int` Full Usage: `BaseQualityThreshold int` Parameters: Item : `int`	the quality value that a base is qualified. Default 15 means phred quality >=Q15 is qualified. Item : `int`
`DisableQualityFiltering` Full Usage: `DisableQualityFiltering`	quality filtering is enabled by default. If this option is specified, quality filtering is disabled.
`NBaseLimit int` Full Usage: `NBaseLimit int` Parameters: Item : `int`	if one read's number of N base is >n_base_limit, then this read/pair is discarded. Default is 5. Item : `int`
`UnqualifiedThreshold int` Full Usage: `UnqualifiedThreshold int` Parameters: Item : `int`	how many percents of bases are allowed to be unqualified (0~100). Default 40 means 40%. Item : `int`

Static member	Description
`QualityFilteringOptions.makeCmd` Full Usage: `QualityFilteringOptions.makeCmd` Returns: `QualityFilteringOptions -> string`	Returns: `QualityFilteringOptions -> string`