UMIProcessingOptions (BioFSharp)

UMIProcessingOptions Type

Namespace: BioFSharp.BioContainers
Assembly: BioFSharp.BioContainers.dll
Parent Module: FastP
Base Type: obj
All Interfaces: IEquatable<UMIProcessingOptions> , IStructuralEquatable , IComparable<UMIProcessingOptions> , IComparable , IStructuralComparable

Union case	Description
`EnableUMI` Full Usage: `EnableUMI`	enable unique molecular identifer (UMI) preprocessing.
`Location UMILocation` Full Usage: `Location UMILocation` Parameters: Item : `UMILocation`	specify the location of UMI, can be index1/index2/read1/read2/per_index/per_read, default is none. Item : `UMILocation`
`UMILength int` Full Usage: `UMILength int` Parameters: Item : `int`	if the UMI is in read1/read2, its length should be provided. Item : `int`
`UMIPrefix string` Full Usage: `UMIPrefix string` Parameters: Item : `string`	if specified, an underline will be used to connect prefix and UMI (i.e. prefix=UMI, UMI=AATTCG, final=UMI_AATTCG). No prefix by default. Item : `string`
`UMISkip int` Full Usage: `UMISkip int` Parameters: Item : `int`	if the UMI is in read1/read2, fastp can skip several bases following UMI, default is 0. Item : `int`

Static member	Description
`UMIProcessingOptions.makeCmd` Full Usage: `UMIProcessingOptions.makeCmd` Returns: `UMIProcessingOptions -> string`	Returns: `UMIProcessingOptions -> string`