HMMalign (BioFSharp)

HMMalign Module

Namespace: BioFSharp.BioContainers
Assembly: BioFSharp.BioContainers.dll
Parent Module: HMMER

hmmalign - align sequences to a profile

Types

Type	Description
HMMalignParams

Functions and values

Function or value Description

Function or value	Description
`runHMMalign bcContext opt` Full Usage: `runHMMalign bcContext opt` Parameters: bcContext : `BcContext` opt : `HMMalignParams list`	Perform a multiple sequence alignment of all the sequences in seqfile by aligning them individually to the profile HMM in hmmfile. The new alignment is output to stdout (when not specified otherwise). bcContext : `BcContext` opt : `HMMalignParams list`
`runHMMalignAsync bcContext opt` Full Usage: `runHMMalignAsync bcContext opt` Parameters: bcContext : `BcContext` opt : `HMMalignParams list` Returns: `Async<unit>`	bcContext : `BcContext` opt : `HMMalignParams list` Returns: `Async<unit>`


                
                  
                    
                      runHMMalign bcContext opt

Full Usage: runHMMalign bcContext opt

Parameters:

bcContext : BcContext

opt : HMMalignParams list

Perform a multiple sequence alignment of all the sequences in seqfile by aligning them individually to the profile HMM in hmmfile. The new alignment is output to stdout (when not specified otherwise).

bcContext : BcContext
opt : HMMalignParams list


                
                  
                    
                      runHMMalignAsync bcContext opt

Full Usage: runHMMalignAsync bcContext opt

Parameters:

bcContext : BcContext

opt : HMMalignParams list

Returns: Async<unit>

bcContext : BcContext
opt : HMMalignParams list

Returns: Async<unit>