HMMER (BioFSharp)

HMMER Module

HMMER - Biological sequence analysis using profile hidden Markov models (http://hmmer.org/) Functions providing an API for the HMMER 3 biocontainer

Type/Module	Description
HMMalign	hmmalign - align sequences to a profile
HMMbuild	hmmbuild - construct profiles from multiple sequence alignments
HMMconvert
HMMemit	hmmemit - sample sequences from a profile
HMMpress	hmmpress - prepare a profile database for hmmscan
HMMscan	hmmscan - search sequence(s) against a profile database
HMMsearch	hmmsearch - search profile(s) against a sequence database
AccelerationHeuristicsOptions	Options controlling acceleration heuristics:
AlphabetType
InclusionThresholdOptions	Options controlling inclusion (significance) thresholds:
ModelSpecificThresholdOptions	Options controlling model-specific thresholding:
ReportingThresholdOptions	Options controlling reporting thresholds: