HMMscan (BioFSharp)

HMMscan Module

Namespace: BioFSharp.BioContainers
Assembly: BioFSharp.BioContainers.dll
Parent Module: HMMER

hmmscan - search sequence(s) against a profile database

Types

Type	Description
HMMscanParams
MiscellaneousOptions	Other expert options:
OutputDirectionsOptions	Options controlling output:

Functions and values

Function or value Description

Function or value	Description
`runHMMscan bcContext opt` Full Usage: `runHMMscan bcContext opt` Parameters: bcContext : `BcContext` opt : `HMMscanParams list`	hmmscan is used to search protein sequences against collections of protein profiles. For each sequence in seqfile, use that query sequence to search the target database of profiles in hmmdb, and output ranked lists of the profiles with the most significant matches to the sequence bcContext : `BcContext` opt : `HMMscanParams list`
`runHMMscanAsync bcContext opt` Full Usage: `runHMMscanAsync bcContext opt` Parameters: bcContext : `BcContext` opt : `HMMscanParams list` Returns: `Async<unit>`	bcContext : `BcContext` opt : `HMMscanParams list` Returns: `Async<unit>`


                
                  
                    
                      runHMMscan bcContext opt

Full Usage: runHMMscan bcContext opt

Parameters:

bcContext : BcContext

opt : HMMscanParams list

hmmscan is used to search protein sequences against collections of protein profiles. For each sequence in seqfile, use that query sequence to search the target database of profiles in hmmdb, and output ranked lists of the profiles with the most significant matches to the sequence

bcContext : BcContext
opt : HMMscanParams list


                
                  
                    
                      runHMMscanAsync bcContext opt

Full Usage: runHMMscanAsync bcContext opt

Parameters:

bcContext : BcContext

opt : HMMscanParams list

Returns: Async<unit>

bcContext : BcContext
opt : HMMscanParams list

Returns: Async<unit>