HMMbuild (BioFSharp)

HMMbuild Module

hmmbuild - construct profiles from multiple sequence alignments

Type	Description
EValueControlOptions
EffectiveSequenceWeightingOptions	Alternative effective sequence weighting strategies:
HMMbuildParams
MiscellaneousOptions	Other options:
ModelConstructionOptions	Alternative model construction strategies:
PriorOptions	Alternative prior strategies:
RelativeSequenceWeightingOptions	Alternative relative sequence weighting strategies:
SingleSequenceHandlingOptions	Handling single sequence inputs:
SubstitutionScoreMatrix

Function or value Description

Function or value	Description
`runHMMbuild bcContext opt` Full Usage: `runHMMbuild bcContext opt` Parameters: bcContext : `BcContext` opt : `HMMbuildParams list`	For each multiple sequence alignment in a msafile build a profile HMM and save it to a new hmmfile. bcContext : `BcContext` opt : `HMMbuildParams list`
`runHMMbuildAsync bcContext opt` Full Usage: `runHMMbuildAsync bcContext opt` Parameters: bcContext : `BcContext` opt : `HMMbuildParams list` Returns: `Async<unit>`	bcContext : `BcContext` opt : `HMMbuildParams list` Returns: `Async<unit>`


                
                  
                    
                      runHMMbuild bcContext opt

Full Usage: runHMMbuild bcContext opt

Parameters:

bcContext : BcContext

opt : HMMbuildParams list

For each multiple sequence alignment in a msafile build a profile HMM and save it to a new hmmfile.


                
                  
                    
                      runHMMbuildAsync bcContext opt

Full Usage: runHMMbuildAsync bcContext opt

Parameters:

bcContext : BcContext

opt : HMMbuildParams list

Returns: Async<unit>