EffectiveSequenceWeightingOptions (BioFSharp) | BioFSharp

EffectiveSequenceWeightingOptions Type

Namespace: BioFSharp.BioContainers
Assembly: BioFSharp.BioContainers.dll
Parent Module: HMMbuild
Base Type: obj
All Interfaces: IEquatable<EffectiveSequenceWeightingOptions> , IStructuralEquatable , IComparable<EffectiveSequenceWeightingOptions> , IComparable , IStructuralComparable

Alternative effective sequence weighting strategies:

Union cases

Union case	Description
`ClusterIdentityCutoff float` Full Usage: `ClusterIdentityCutoff float` Parameters: Item : `float`	for SingleLinkageClusters: set fractional identity cutoff to [0.62] Item : `float`
`EntropySigma float` Full Usage: `EntropySigma float` Parameters: Item : `float`	for EntropyTargeted: set sigma param to [45.0] Item : `float`
`EntropyTargeted` Full Usage: `EntropyTargeted`	adjust eff seq # to achieve relative entropy target
`MinimalEntropy float` Full Usage: `MinimalEntropy float` Parameters: Item : `float`	for EntropyTargeted: set minimum rel entropy/position to Item : `float`
`NoEffectiveWeighting` Full Usage: `NoEffectiveWeighting`	no effective seq # weighting: just use nseq
`Set float` Full Usage: `Set float` Parameters: Item : `float`	set eff seq # for all models to Item : `float`
`SingleLinkageClusters` Full Usage: `SingleLinkageClusters`	eff seq # is # of single linkage clusters

Static members

Static member	Description
`EffectiveSequenceWeightingOptions.make` Full Usage: `EffectiveSequenceWeightingOptions.make` Returns: `EffectiveSequenceWeightingOptions -> string list`	Returns: `EffectiveSequenceWeightingOptions -> string list`