HMMbuildParams (BioFSharp)

HMMbuildParams Type

Namespace: BioFSharp.BioContainers
Assembly: BioFSharp.BioContainers.dll
Parent Module: HMMbuild
Base Type: obj
All Interfaces: IEquatable<HMMbuildParams> , IStructuralEquatable , IComparable<HMMbuildParams> , IComparable , IStructuralComparable

Union cases

Union case	Description
`Alphabet AlphabetType list` Full Usage: `Alphabet AlphabetType list` Parameters: Item : `AlphabetType list`	Specify the alphabet used in the alignment file Item : `AlphabetType list`
`EValueControl EValueControlOptions list` Full Usage: `EValueControl EValueControlOptions list` Parameters: Item : `EValueControlOptions list`	Control of E-value calibration Item : `EValueControlOptions list`
`EffectiveSequenceWeighting EffectiveSequenceWeightingOptions list` Full Usage: `EffectiveSequenceWeighting EffectiveSequenceWeightingOptions list` Parameters: Item : `EffectiveSequenceWeightingOptions list`	Alternative effective sequence weighting strategies Item : `EffectiveSequenceWeightingOptions list`
`InputMSAFile string` Full Usage: `InputMSAFile string` Parameters: Item : `string`	Multiple sequence alignment input file Item : `string`
`Miscellaneous MiscellaneousOptions list` Full Usage: `Miscellaneous MiscellaneousOptions list` Parameters: Item : `MiscellaneousOptions list`	Other options Item : `MiscellaneousOptions list`
`ModelConstruction ModelConstructionOptions list` Full Usage: `ModelConstruction ModelConstructionOptions list` Parameters: Item : `ModelConstructionOptions list`	Alternative model construction strategies: Item : `ModelConstructionOptions list`
`Name string` Full Usage: `Name string` Parameters: Item : `string`	name the HMM Item : `string`
`OutputHMMFile string` Full Usage: `OutputHMMFile string` Parameters: Item : `string`	HMM file to save the generated HMMs to Item : `string`
`Prior PriorOptions list` Full Usage: `Prior PriorOptions list` Parameters: Item : `PriorOptions list`	Alternative prior strategies Item : `PriorOptions list`
`RelativeSequenceWeighting RelativeSequenceWeightingOptions list` Full Usage: `RelativeSequenceWeighting RelativeSequenceWeightingOptions list` Parameters: Item : `RelativeSequenceWeightingOptions list`	Alternative relative sequence weighting strategies Item : `RelativeSequenceWeightingOptions list`
`ResaveFile string` Full Usage: `ResaveFile string` Parameters: Item : `string`	resave annotated, possibly modified MSA to file Item : `string`
`SingleSequenceHandling SingleSequenceHandlingOptions list` Full Usage: `SingleSequenceHandling SingleSequenceHandlingOptions list` Parameters: Item : `SingleSequenceHandlingOptions list`	Handling single sequence inputs Item : `SingleSequenceHandlingOptions list`
`SummaryToFile string` Full Usage: `SummaryToFile string` Parameters: Item : `string`	direct summary output to file , not stdout Item : `string`

Static members

Static member Description

Static member	Description
`HMMbuildParams.makeCmd` Full Usage: `HMMbuildParams.makeCmd` Returns: `HMMbuildParams -> string list`	Returns: `HMMbuildParams -> string list`
`HMMbuildParams.makeCmdWith m` Full Usage: `HMMbuildParams.makeCmdWith m` Parameters: m : `MountInfo` Returns: `HMMbuildParams -> string list`	m : `MountInfo` Returns: `HMMbuildParams -> string list`


                
                  
                    
                      HMMbuildParams.makeCmd

Full Usage: HMMbuildParams.makeCmd

Returns: HMMbuildParams -> string list

Returns: HMMbuildParams -> string list


                
                  
                    
                      HMMbuildParams.makeCmdWith m

Full Usage: HMMbuildParams.makeCmdWith m

Parameters:

m : MountInfo

Returns: HMMbuildParams -> string list

m : MountInfo

Returns: HMMbuildParams -> string list