RelativeSequenceWeightingOptions (BioFSharp) | BioFSharp

RelativeSequenceWeightingOptions Type

Namespace: BioFSharp.BioContainers
Assembly: BioFSharp.BioContainers.dll
Parent Module: HMMbuild
Base Type: obj
All Interfaces: IEquatable<RelativeSequenceWeightingOptions> , IStructuralEquatable , IComparable<RelativeSequenceWeightingOptions> , IComparable , IStructuralComparable

Alternative relative sequence weighting strategies:

Union cases

Union case	Description
`Blosum` Full Usage: `Blosum`	Henikoff simple filter weights
`BlosumIdentityCutoff float` Full Usage: `BlosumIdentityCutoff float` Parameters: Item : `float`	for Blosum: set identity cutoff (0<=x<=1) Item : `float`
`GSC` Full Usage: `GSC`	Gerstein/Sonnhammer/Chothia tree weights
`Given` Full Usage: `Given`	use weights as given in MSA file
`NoRelativeWeighting` Full Usage: `NoRelativeWeighting`	don't do any relative weighting; set all to 1
`PositionBased` Full Usage: `PositionBased`	Henikoff position-based weights

Static members

Static member	Description
`RelativeSequenceWeightingOptions.make` Full Usage: `RelativeSequenceWeightingOptions.make` Returns: `RelativeSequenceWeightingOptions -> string list`	Returns: `RelativeSequenceWeightingOptions -> string list`