HMMpress (BioFSharp)

HMMpress Module

Namespace: BioFSharp.BioContainers
Assembly: BioFSharp.BioContainers.dll
Parent Module: HMMER

hmmpress - prepare a profile database for hmmscan

Types

Type	Description
HMMpressParams

Functions and values

Function or value Description

Function or value	Description
`runHMMpress bcContext opt` Full Usage: `runHMMpress bcContext opt` Parameters: bcContext : `BcContext` opt : `HMMpressParams list`	Constructs binary compressed datafiles for hmmscan, starting from a profile database hmmfile in standard HMMER3 format. The hmmpress step is required for hmmscan to work. bcContext : `BcContext` opt : `HMMpressParams list`
`runHMMpressAsync bcContext opt` Full Usage: `runHMMpressAsync bcContext opt` Parameters: bcContext : `BcContext` opt : `HMMpressParams list` Returns: `Async<unit>`	bcContext : `BcContext` opt : `HMMpressParams list` Returns: `Async<unit>`


                
                  
                    
                      runHMMpress bcContext opt

Full Usage: runHMMpress bcContext opt

Parameters:

bcContext : BcContext

opt : HMMpressParams list

Constructs binary compressed datafiles for hmmscan, starting from a profile database hmmfile in standard HMMER3 format. The hmmpress step is required for hmmscan to work.

bcContext : BcContext
opt : HMMpressParams list


                
                  
                    
                      runHMMpressAsync bcContext opt

Full Usage: runHMMpressAsync bcContext opt

Parameters:

bcContext : BcContext

opt : HMMpressParams list

Returns: Async<unit>

bcContext : BcContext
opt : HMMpressParams list

Returns: Async<unit>