HMMsearch (BioFSharp)

HMMsearch Module

Namespace: BioFSharp.BioContainers
Assembly: BioFSharp.BioContainers.dll
Parent Module: HMMER

hmmsearch - search profile(s) against a sequence database

Types

Type	Description
HMMsearchParams
MiscellaneousOptions	Other expert options:
OutputDirectionsOptions	Options directing output:

Functions and values

Function or value Description

Function or value	Description
`runHMMalign bcContext opt` Full Usage: `runHMMalign bcContext opt` Parameters: bcContext : `BcContext` opt : `HMMsearchParams list`	hmmsearch is used to search one or more profiles against a sequence database. For each profile in hmmfile, use that query profile to search the target database of sequences in seqdb, and output ranked lists of the sequences with the most significant matches to the profile bcContext : `BcContext` opt : `HMMsearchParams list`
`runHMMsearchAsync bcContext opt` Full Usage: `runHMMsearchAsync bcContext opt` Parameters: bcContext : `BcContext` opt : `HMMsearchParams list` Returns: `Async<unit>`	bcContext : `BcContext` opt : `HMMsearchParams list` Returns: `Async<unit>`


                
                  
                    
                      runHMMalign bcContext opt

Full Usage: runHMMalign bcContext opt

Parameters:

bcContext : BcContext

opt : HMMsearchParams list

hmmsearch is used to search one or more profiles against a sequence database. For each profile in hmmfile, use that query profile to search the target database of sequences in seqdb, and output ranked lists of the sequences with the most significant matches to the profile

bcContext : BcContext
opt : HMMsearchParams list


                
                  
                    
                      runHMMsearchAsync bcContext opt

Full Usage: runHMMsearchAsync bcContext opt

Parameters:

bcContext : BcContext

opt : HMMsearchParams list

Returns: Async<unit>

bcContext : BcContext
opt : HMMsearchParams list

Returns: Async<unit>