HMMsearchParams (BioFSharp)

HMMsearchParams Type

Namespace: BioFSharp.BioContainers
Assembly: BioFSharp.BioContainers.dll
Parent Module: HMMsearch
Base Type: obj
All Interfaces: IEquatable<HMMsearchParams> , IStructuralEquatable , IComparable<HMMsearchParams> , IComparable , IStructuralComparable

Union cases

Union case	Description
`AccelerationHeuristics AccelerationHeuristicsOptions list` Full Usage: `AccelerationHeuristics AccelerationHeuristicsOptions list` Parameters: Item : `AccelerationHeuristicsOptions list`	Options controlling acceleration heuristics Item : `AccelerationHeuristicsOptions list`
`InclusionThreshold InclusionThresholdOptions list` Full Usage: `InclusionThreshold InclusionThresholdOptions list` Parameters: Item : `InclusionThresholdOptions list`	Options controlling inclusion (significance) thresholds Item : `InclusionThresholdOptions list`
`InputHMMFile string` Full Usage: `InputHMMFile string` Parameters: Item : `string`	Input HMM file containing query profiles to search for Item : `string`
`Miscellaneous MiscellaneousOptions list` Full Usage: `Miscellaneous MiscellaneousOptions list` Parameters: Item : `MiscellaneousOptions list`	Other expert options Item : `MiscellaneousOptions list`
`ModelSpecificThreshold ModelSpecificThresholdOptions list` Full Usage: `ModelSpecificThreshold ModelSpecificThresholdOptions list` Parameters: Item : `ModelSpecificThresholdOptions list`	Options controlling model-specific thresholding Item : `ModelSpecificThresholdOptions list`
`OutputDirections OutputDirectionsOptions list` Full Usage: `OutputDirections OutputDirectionsOptions list` Parameters: Item : `OutputDirectionsOptions list`	Options directing output Item : `OutputDirectionsOptions list`
`ReportingThreshold ReportingThresholdOptions list` Full Usage: `ReportingThreshold ReportingThresholdOptions list` Parameters: Item : `ReportingThresholdOptions list`	Options controlling reporting thresholds Item : `ReportingThresholdOptions list`
`SequenceDB string` Full Usage: `SequenceDB string` Parameters: Item : `string`	Input sequence database to search query profiles in Item : `string`

Static members

Static member Description

Static member	Description
`HMMsearchParams.makeCMD` Full Usage: `HMMsearchParams.makeCMD` Returns: `HMMsearchParams -> string list`	Returns: `HMMsearchParams -> string list`
`HMMsearchParams.makeCmdWith m` Full Usage: `HMMsearchParams.makeCmdWith m` Parameters: m : `MountInfo` Returns: `HMMsearchParams -> string list`	m : `MountInfo` Returns: `HMMsearchParams -> string list`


                
                  
                    
                      HMMsearchParams.makeCMD

Full Usage: HMMsearchParams.makeCMD

Returns: HMMsearchParams -> string list

Returns: HMMsearchParams -> string list


                
                  
                    
                      HMMsearchParams.makeCmdWith m

Full Usage: HMMsearchParams.makeCmdWith m

Parameters:

m : MountInfo

Returns: HMMsearchParams -> string list

m : MountInfo

Returns: HMMsearchParams -> string list