HMMemit (BioFSharp)

HMMemit Module

Namespace: BioFSharp.BioContainers
Assembly: BioFSharp.BioContainers.dll
Parent Module: HMMER

hmmemit - sample sequences from a profile

Types

Type	Description
EmitControllingOptions	Options controlling what to emit:
FancyConsensusOptions	Options controlling fancy consensus emission with -C:
HMMemitParams
ProfileSamplingOptions	Options controlling emission from profiles with SampleFromProfile:

Functions and values

Function or value Description

Function or value	Description
`runHMMemit bcContext opt` Full Usage: `runHMMemit bcContext opt` Parameters: bcContext : `BcContext` opt : `HMMemitParams list`	The hmmemit program samples (emits) sequences from the profile HMM(s) in hmmfile, and writes them to output. Sampling sequences may be useful for a variety of purposes, including creating synthetic true positives for benchmarks or tests. bcContext : `BcContext` opt : `HMMemitParams list`
`runHMMemitAsync bcContext opt` Full Usage: `runHMMemitAsync bcContext opt` Parameters: bcContext : `BcContext` opt : `HMMemitParams list` Returns: `Async<unit>`	bcContext : `BcContext` opt : `HMMemitParams list` Returns: `Async<unit>`


                
                  
                    
                      runHMMemit bcContext opt

Full Usage: runHMMemit bcContext opt

Parameters:

bcContext : BcContext

opt : HMMemitParams list

The hmmemit program samples (emits) sequences from the profile HMM(s) in hmmfile, and writes them to output. Sampling sequences may be useful for a variety of purposes, including creating synthetic true positives for benchmarks or tests.

bcContext : BcContext
opt : HMMemitParams list


                
                  
                    
                      runHMMemitAsync bcContext opt

Full Usage: runHMMemitAsync bcContext opt

Parameters:

bcContext : BcContext

opt : HMMemitParams list

Returns: Async<unit>

bcContext : BcContext
opt : HMMemitParams list

Returns: Async<unit>