HMMemitParams (BioFSharp)

HMMemitParams Type

Namespace: BioFSharp.BioContainers
Assembly: BioFSharp.BioContainers.dll
Parent Module: HMMemit
Base Type: obj
All Interfaces: IEquatable<HMMemitParams> , IStructuralEquatable , IComparable<HMMemitParams> , IComparable , IStructuralComparable

Union case	Description
`EmitControlling EmitControllingOptions list` Full Usage: `EmitControlling EmitControllingOptions list` Parameters: Item : `EmitControllingOptions list`	Options controlling what to emit Item : `EmitControllingOptions list`
`FancyConsensus FancyConsensusOptions list` Full Usage: `FancyConsensus FancyConsensusOptions list` Parameters: Item : `FancyConsensusOptions list`	Options controlling fancy consensus emission with EmitConsensusFancy. Only use when using EmitConsensusFancy as EmitControllingOption Item : `FancyConsensusOptions list`
`HMMInputFile string` Full Usage: `HMMInputFile string` Parameters: Item : `string`	Options controlling fancy consensus emission with Item : `string`
`OutputToFile string` Full Usage: `OutputToFile string` Parameters: Item : `string`	direct output to file , not stdout Item : `string`
`ProfileSampling ProfileSamplingOptions list` Full Usage: `ProfileSampling ProfileSamplingOptions list` Parameters: Item : `ProfileSamplingOptions list`	Options controlling emission from profiles with SampleFromProfile. Only use when using SampleFromProfile as EmitControllingOption Item : `ProfileSamplingOptions list`
`RNGSeed int` Full Usage: `RNGSeed int` Parameters: Item : `int`	set RNG seed Item : `int`
`SampleAmount int` Full Usage: `SampleAmount int` Parameters: Item : `int`	number of seqs to sample Item : `int`

Static member Description

Static member	Description
`HMMemitParams.makeCmd` Full Usage: `HMMemitParams.makeCmd` Returns: `HMMemitParams -> string list`	Returns: `HMMemitParams -> string list`
`HMMemitParams.makeCmdWith m` Full Usage: `HMMemitParams.makeCmdWith m` Parameters: m : `MountInfo` Returns: `HMMemitParams -> string list`	m : `MountInfo` Returns: `HMMemitParams -> string list`


                
                  
                    
                      HMMemitParams.makeCmd

Full Usage: HMMemitParams.makeCmd

Returns: HMMemitParams -> string list


                
                  
                    
                      HMMemitParams.makeCmdWith m

Full Usage: HMMemitParams.makeCmdWith m

Parameters:

m : MountInfo

Returns: HMMemitParams -> string list