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--seedBP arg (=7) number of inter-molecular base pairs within the
seed region (arg in range [2,20])
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Item
:
int
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--seedMaxUP arg (=0) maximal overall number (query+target) of
unpaired bases within the seed region (arg in
range [0,20])
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Item
:
int
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--noSeed if present, no seed is enforced within the
predicted interactions
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--seedTQ arg comma separated list of explicit seed base pair
encoding(s) in the format startTbpsT&startQbpsQ,
e.g. '3|||.|&7||.||', where startT/Q are the
indices of the 5' seed ends in target/query
sequence and 'bps' the dot-bar base pair
encodings. This disables all other seed
constraints and seed identification.
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Item
:
string
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BioFSharp