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BioItem Module

Basic functions on IBioItems interface

Functions and values

Function or value Description

averageMass

Full Usage: averageMass

Returns: IBioItem -> float
Modifiers: inline
Type parameters: 'a

Returns the average mass of a bio item (without H20)

Returns: IBioItem -> float

formula bItem

Full Usage: formula bItem

Parameters:
    bItem : 'a

Returns: Formula
Modifiers: inline
Type parameters: 'a

Returns the formula of the bio item

bItem : 'a
Returns: Formula

initAverageMassWithMem

Full Usage: initAverageMassWithMem

Returns: IBioItem -> float

Returns a function to calculate the average mass of a bio item with memoization !Attention! Not thread safe!

Returns: IBioItem -> float

initAverageMassWithMemP

Full Usage: initAverageMassWithMemP

Returns: IBioItem -> float

Returns a function to calculate the average mass of a bio item with memoization

Returns: IBioItem -> float

initMonoisoMassWithMem

Full Usage: initMonoisoMassWithMem

Returns: IBioItem -> float

Returns a function to calculate the monoisotopic mass of a bio item with memoization !Attention! Not thread safe!

Returns: IBioItem -> float

initMonoisoMassWithMemP

Full Usage: initMonoisoMassWithMemP

Returns: IBioItem -> float

Returns a function to calculate the monoisotopic mass of a bio item with memoization

Returns: IBioItem -> float

isGap bItem

Full Usage: isGap bItem

Parameters:
    bItem : 'a

Returns: bool
Modifiers: inline
Type parameters: 'a

Returns true if the bio item represents a sequence gap

bItem : 'a
Returns: bool

isTerminator bItem

Full Usage: isTerminator bItem

Parameters:
    bItem : 'a

Returns: bool
Modifiers: inline
Type parameters: 'a

Returns true if the bio item represents a sequence terminator

bItem : 'a
Returns: bool

monoisoMass

Full Usage: monoisoMass

Returns: IBioItem -> float
Modifiers: inline
Type parameters: 'a

Returns the monoisotopic mass of a bio item (without H20)

Returns: IBioItem -> float

name bItem

Full Usage: name bItem

Parameters:
    bItem : 'a

Returns: string
Modifiers: inline
Type parameters: 'a

Returns the display name of the bio item

bItem : 'a
Returns: string

symbol bItem

Full Usage: symbol bItem

Parameters:
    bItem : 'a

Returns: char
Modifiers: inline
Type parameters: 'a

Returns the symbol of the bio item

bItem : 'a
Returns: char

Type something to start searching.