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OptionConverter Module

Contains Functionalities for trying to parse Bioitems

Types

Type Description

AminoAcidOptionConverter

Type abbreviation for converting char to optional AminoAcid

NucleotideOptionConverter

Type abbreviation for converting char to optional Nucleotide

Functions and values

Function or value Description

charToOptionAminoAcid aac

Full Usage: charToOptionAminoAcid aac

Parameters:
    aac : char

Returns: AminoAcid option

Converters char to AminoAcid option by ignoring bad character

aac : char
Returns: AminoAcid option

charToOptionAminoAcidWithoutGapTer aac

Full Usage: charToOptionAminoAcidWithoutGapTer aac

Parameters:
    aac : char

Returns: AminoAcid option

Converters char to AminoAcid option by ignoring bad character Ignores Gap and Ter

aac : char
Returns: AminoAcid option

charToOptionNucleotid nuc

Full Usage: charToOptionNucleotid nuc

Parameters:
    nuc : char

Returns: Nucleotide option

Converters char to AminoAcid option by ignoring bad character

nuc : char
Returns: Nucleotide option

charToOptionStandardAminoAcid aac

Full Usage: charToOptionStandardAminoAcid aac

Parameters:
    aac : char

Returns: AminoAcid option

Converters char to AminoAcid option by ignoring bad character and ambiguis code

aac : char
Returns: AminoAcid option

charToOptionStandardAminoAcidWithoutGapTer aac

Full Usage: charToOptionStandardAminoAcidWithoutGapTer aac

Parameters:
    aac : char

Returns: AminoAcid option

Converters char to AminoAcid option by ignoring bad character and ambiguis code Ignores Gap and Ter

aac : char
Returns: AminoAcid option

charToOptionStandardNucleotid nuc

Full Usage: charToOptionStandardNucleotid nuc

Parameters:
    nuc : char

Returns: Nucleotide option

Converters char to AminoAcid option by ignoring bad character

nuc : char
Returns: Nucleotide option

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