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BioSeq Module

Functions and values

Function or value Description

concernMissCleavages minMissCleavages maxMisscleavages digestedPeptides

Full Usage: concernMissCleavages minMissCleavages maxMisscleavages digestedPeptides

Parameters:
    minMissCleavages : int
    maxMisscleavages : int
    digestedPeptides : DigestedPeptide<'a> seq

Returns: DigestedPeptide<'a> seq

Returns Sequence of DigestedPeptides including those resulting of one or more Misscleavage events.

minMissCleavages : int
maxMisscleavages : int
digestedPeptides : DigestedPeptide<'a> seq
Returns: DigestedPeptide<'a> seq

digest protease proteinID aas

Full Usage: digest protease proteinID aas

Parameters:
Returns: DigestedPeptide<'a> seq

Cuts AminoAcid sequence at each place, where the sequence fits the cutting pattern of the protease. Returns sequence of resulting AminoAcid sequences

protease : Protease
proteinID : 'a
aas : AminoAcid seq
Returns: DigestedPeptide<'a> seq

motivy prefixLength suffixLength source

Full Usage: motivy prefixLength suffixLength source

Parameters:
    prefixLength : int
    suffixLength : int
    source : 'T seq

Returns: ('T * 'T option[]) seq

Returns current value,array tuple (current, [|prefix; current; suffix)

prefixLength : int
suffixLength : int
source : 'T seq
Returns: ('T * 'T option[]) seq

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