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Provide an identifier for this entity. This identifier is used only as an internal reference within a given file. The identifier will not appear on final GEO records.
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Item
:
string
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Custom Attributes Used in the SOFT file
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Item1
:
string
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Item2
:
string
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Use for SAGE submissions only.
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Item
:
string
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"Specify the name of the company, laboratory or person that provided the biological material."
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Item1
:
int
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Item2
:
string
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"Describe all available characteristics of the biological source, including factors not necessarily under investigation. Provide in 'Tag: Value' format, where 'Tag' is a type of characteristic (e.g. ""gender"", ""strain"", ""tissue"", ""developmental stage"", ""tumor stage"", etc), and 'Value' is the value for each tag (e.g. ""female"", ""129SV"", ""brain"", ""embryo"", etc). Include as many characteristics fields as necessary to thoroughly describe your Samples."
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Item1
:
int
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Item2
:
string
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"Provide details of how data in the VALUE column of your table were generated and calculated, i.e., normalization method, data selection procedures and parameters, transformation algorithm (e.g., MAS5.0), and scaling parameters. You can include as much text as you need to thoroughly describe the processing procedures."
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Item
:
string
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"Include any additional information not provided in the other fields, or paste in broad descriptions that cannot be easily dissected into the other fields."
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Item
:
string
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Describe the protocol used to isolate the extract material. You can include as much text as you need to thoroughly describe the protocol; it is strongly recommended that complete protocol descriptions are provided within your submission.
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Item1
:
int
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Item2
:
string
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Only use for performing�updates�to existing GEO records.
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Item
:
string
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Describe the conditions that were used to grow or maintain organisms or cells prior to extract preparation. You can include as much text as you need to thoroughly describe the protocol; it is strongly recommended that complete protocol descriptions are provided within your submission.
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Item1
:
int
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Item2
:
string
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"Describe the protocols used for hybridization, blocking and washing, and any post-processing steps such as staining. You can include as much text as you need to thoroughly describe the protocol; it is strongly recommended that complete protocol descriptions are provided within your submission."
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Item
:
string
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"Specify the compound used to label the extract e.g., biotin, Cy3, Cy5, 33P."
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Item1
:
int
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Item2
:
string
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Describe the protocol used to label the extract. You can include as much text as you need to thoroughly describe the protocol; it is strongly recommended that complete protocol descriptions are provided within your submission.
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Item1
:
int
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Item2
:
string
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Specify the type of molecule that was extracted from the biological material.
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Item1
:
int
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Item2
:
string
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Identify the organism(s) from which the biological material was derived.
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Item1
:
int
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Item2
:
string
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"Reference the Platform upon which this hybridization was performed. Reference the Platform accession number (GPLxxx) if the Platform already exists in GEO, or reference the ^Platform identifier if the Platform record is being batch submitted within the same SOFT file. To identify the accession number of an existing commercial Platform in GEO, use the�FIND PLATFORM�tool."
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Item
:
string
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"Sample relation, e.g. SRA accession or BioSample id"
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Item
:
string
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"Describe the scanning and image acquisition protocols, hardware, and software. You can include as much text as you need to thoroughly describe the protocol; it is strongly recommended that complete protocol descriptions are provided within your submission."
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Item
:
string
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"Briefly identify the biological material and the experimental variable(s), e.g., vastus lateralis muscle, exercised, 60 min."
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Item1
:
int
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Item2
:
string
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"Examples of supplementary file types include original Affymetrix CEL and EXP files, GenePix GPR files, and TIFF image files. Supplementary files should be zipped or tarred together with the SOFT file at time of submission (do not include any sub-directories or sub-folders in your zip/tar archive). Provision of supplementary raw data files facilitates the unambiguous interpretation of data and potential verification of conclusions as set forth in the MIAME guidelines."
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Item1
:
int
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Item2
:
string
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- Affymetrix CHP file name:"If your processed data are CHP files, you can reference the CHP file name in this field. If your manuscript discusses data processed by RMA or another algorithm, we recommend providing those values in the�table section. There is no need to specify the !Sample_platform_id when CHP files are supplied. All external files should be zipped or tarred together with the SOFT file at time of submission."- Tab-delimited table file name:"If it is convenient for you to generate, you can reference the name of an external tab-delimited table file (see format) in this field, rather than include the table in the !Sample_table_begin section. All external files should be zipped or tarred together with the SOFT file at time of submission."
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Item
:
string
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Indicates the start of the data table.
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Item
:
string
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Item
:
string
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Indicates the end of the data table.
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Item
:
string
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Table formatted data header
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Item1
:
string
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Item2
:
string
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Use for SAGE submissions only.
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Item
:
string
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Use for SAGE submissions only.
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Item
:
string
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"Provide a unique title that describes this Sample. We suggest that you use the system [biomaterial]-[condition(s)]-[replicate number], e.g., Muscle_exercised_60min_rep2."
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Item
:
string
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Describe any treatments applied to the biological material prior to extract preparation. You can include as much text as you need to thoroughly describe the protocol; it is strongly recommended that complete protocol descriptions are provided within your submission.
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Item1
:
int
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Item2
:
string
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Use for SAGE submissions only.
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Item
:
string
|
BioFSharp