DPPOP (BioFSharp) | BioFSharp

DPPOP Module

Namespace: BioFSharp.ML
Assembly: BioFSharp.ML.dll

DPPOP - DeeP Peptide Observability Predictor. d::pPop uses a deep neural network to predict proteotypic peptides for proteins of interest. See the publication: https://www.frontiersin.org/articles/10.3389/fpls.2018.01559/full

Types and nested modules

Type/Module	Description
Classification	Contains functions to extract the features used in dppop to classify peptides for observability prediction
Prediction	Contains functions to execute peptide observability prediction using the deep neural network dppop.
PredictionInput	Record type containing feature vector, proteinId, and sequence of a peptide
PredictionOutput	Record type containing prediction score, proteinId, and sequence of a peptide

Functions and values

Function or value	Description
`createPredictionInput data protID sequence` Full Usage: `createPredictionInput data protID sequence` Parameters: data : `float[]` protID : `string` sequence : `string` Returns: `PredictionInput`	returns a PredictionInput type given the values for the record fields data : `float[]` protID : `string` sequence : `string` Returns: `PredictionInput`
`createPredictionOutput pId sequence score distinct` Full Usage: `createPredictionOutput pId sequence score distinct` Parameters: pId : `string` sequence : `string` score : `float` distinct : `bool` Returns: `PredictionOutput`	returns a PredictionOutput type given the values for the record fields pId : `string` sequence : `string` score : `float` distinct : `bool` Returns: `PredictionOutput`