Nucleotides (BioFSharp) | BioFSharp

Nucleotides Module

Namespace: BioFSharp
Assembly: BioFSharp.dll

Contains the Nucleotide type and its according functions.

Types

Type	Description
Nucleotide	Nucleotide Codes
ParsedNucleotideChar	Lexer tags for parsing Nucleotides

Functions and values

Function or value	Description
`AmbiguousCodonMap` Full Usage: `AmbiguousCodonMap` Returns: `Map<(Nucleotide * Nucleotide * Nucleotide), AminoAcid>`	Codon to AminoAcid Returns: `Map<(Nucleotide * Nucleotide * Nucleotide), AminoAcid>`
`CodonMap` Full Usage: `CodonMap` Returns: `Map<(Nucleotide * Nucleotide * Nucleotide), AminoAcid>`	Codon to AminoAcid Returns: `Map<(Nucleotide * Nucleotide * Nucleotide), AminoAcid>`
`averageMass nuc` Full Usage: `averageMass nuc` Parameters: nuc : `Nucleotide` Returns: `float`	Returns the average mass of nucleotide (without H20) nuc : `Nucleotide` Returns: `float`
`charToParsedNucleotideChar c` Full Usage: `charToParsedNucleotideChar c` Parameters: c : `char` Returns: `ParsedNucleotideChar`	Simple Lexer for parsing Nucleotides from chars. The full parser is located in the BioItemsConverter-module c : `char` Returns: `ParsedNucleotideChar`
`complement nuc` Full Usage: `complement nuc` Parameters: nuc : `Nucleotide` Returns: `Nucleotide`	Returns the Nucleotide from the complementary strand nuc : `Nucleotide` Returns: `Nucleotide`
`formula nuc` Full Usage: `formula nuc` Parameters: nuc : `Nucleotide` Returns: `Formula`	Returns nucleotide formulas minus H20 nuc : `Nucleotide` Returns: `Formula`
`initAverageMassWithMemP` Full Usage: `initAverageMassWithMemP` Returns: `Nucleotide -> float`	Returns a function to calculate the average mass of a nucleotide with memoization Returns: `Nucleotide -> float`
`initMonoisoMassWithMemP` Full Usage: `initMonoisoMassWithMemP` Returns: `Nucleotide -> float`	Returns a function to calculate the monoisotopic mass of a nucleotide with memoization Returns: `Nucleotide -> float`
`isGap nuc` Full Usage: `isGap nuc` Parameters: nuc : `Nucleotide` Returns: `bool`	Returns true if nucleotide represents a sequence gap nuc : `Nucleotide` Returns: `bool`
`isTerminator nuc` Full Usage: `isTerminator nuc` Parameters: nuc : `Nucleotide` Returns: `bool`	Returns true if nucleotide represents a sequence terminator nuc : `Nucleotide` Returns: `bool`
`lookupBytes (n1, n2, n3)` Full Usage: `lookupBytes (n1, n2, n3)` Parameters: n1 : `Nucleotide` - The first character. n2 : `Nucleotide` - The second character. n3 : `Nucleotide` - The third character. Returns: `AminoAcid` True/False if the value exists	Lookup an amino acid based on a triplet of nucleotides. U U U for instance will result in Phenylalanine. If the values cannot be found in the lookup table, `false` will be returned. n1 : `Nucleotide` The first character. n2 : `Nucleotide` The second character. n3 : `Nucleotide` The third character. Returns: `AminoAcid` True/False if the value exists
`monoisoMass nuc` Full Usage: `monoisoMass nuc` Parameters: nuc : `Nucleotide` Returns: `float`	Returns the monoisotopic mass of nucleotide (without H20) nuc : `Nucleotide` Returns: `float`
`name nuc` Full Usage: `name nuc` Parameters: nuc : `Nucleotide` Returns: `string`	Returns the name of nucleotide nuc : `Nucleotide` Returns: `string`
`replaceTbyU nuc` Full Usage: `replaceTbyU nuc` Parameters: nuc : `Nucleotide` Returns: `Nucleotide`	Replace thymidine (T) by uracil (U). For example, the sequence "ATUGC" is converted to "AUUGC". nuc : `Nucleotide` Returns: `Nucleotide`
`replaceUbyT nuc` Full Usage: `replaceUbyT nuc` Parameters: nuc : `Nucleotide` Returns: `Nucleotide`	Replace uracil (U) by thymidine (T). For example, the sequence "ATUGC" is converted to "ATTGC". nuc : `Nucleotide` Returns: `Nucleotide`
`symbol nuc` Full Usage: `symbol nuc` Parameters: nuc : `Nucleotide` Returns: `char`	Returns the symbol of AminoAcid nuc : `Nucleotide` Returns: `char`