AminoProperty (BioFSharp)

AminoProperty Type

Namespace: BioFSharp
Assembly: BioFSharp.dll
Parent Module: AminoProperties
Base Type: obj
All Interfaces: IEquatable<AminoProperty> , IStructuralEquatable , IComparable<AminoProperty> , IComparable , IStructuralComparable

Union case of amino acid properties, referencing the according included information in this library. Use "initGetAminoProperty" function to obtain a simple mapping function

Union cases

Union case	Description
`ALTFT` Full Usage: `ALTFT`	ALTFT index (Cornette et al., 1987)
`ALTLS` Full Usage: `ALTLS`	ALTLS index (Cornette et al., 1987)
`ActivationGibbsEnergy9` Full Usage: `ActivationGibbsEnergy9`	Activation Gibbs energy of unfolding, pH9.0 (Yutani et al., 1987)
`Amphiphilicity` Full Usage: `Amphiphilicity`	PRIFT index (Cornette et al., 1987)
`AverageNumberSurroundingResidues` Full Usage: `AverageNumberSurroundingResidues`	Average number of surrounding residues (Ponnuswamy et al., 1980)
`BetaCoil` Full Usage: `BetaCoil`	Beta-coil equilibrium constant (Ptitsyn-Finkelstein, 1983)
`BetaSheetPropensity` Full Usage: `BetaSheetPropensity`	Beta-sheet propensity derived from designed sequences (Koehl-Levitt, 1999)
`ChouFasmanCoil` Full Usage: `ChouFasmanCoil`	The Chou-Fasman parameter of the coil conformation (Charton-Charton, 1983)
`CompositionExtracellular` Full Usage: `CompositionExtracellular`	Composition of amino acids in extracellular proteins (percent) (Cedano et al., 1997)
`CompositionIntracellular` Full Usage: `CompositionIntracellular`	Interior composition of amino acids in intracellular proteins of mesophiles (percent) (Fukuchi-Nishikawa, 2001)
`ELi` Full Usage: `ELi`	Average relative fractional occurrence in EL(i) (Rackovsky-Scheraga, 1982)
`FreeEnergyHelicalRegion` Full Usage: `FreeEnergyHelicalRegion`	Free energy in alpha-helical region (Munoz-Serrano, 1994)
`GravyScore` Full Usage: `GravyScore`
`Helicity` Full Usage: `Helicity`	Alpha-helix propensity derived from designed sequences (Koehl-Levitt, 1999)
`HelixCoil` Full Usage: `HelixCoil`	Helix-coil equilibrium constant (Ptitsyn-Finkelstein, 1983)
`HelixFormationParameters` Full Usage: `HelixFormationParameters`	Helix formation parameters (delta delta G) (O'Neil-DeGrado, 1990)
`HydrationPotential` Full Usage: `HydrationPotential`	Hydration potential (Wolfenden et al., 1981)
`HydrophobicityFasman` Full Usage: `HydrophobicityFasman`	Hydrophobicity index (Fasman, 1989)
`HydrophobicityIndex` Full Usage: `HydrophobicityIndex`	Hydrophobicity index (Argos et al., 1982)
`HydrophobicityIndex2` Full Usage: `HydrophobicityIndex2`	Hydrophobicity index (Wolfenden et al., 1979)
`MEMofSingleSpanning` Full Usage: `MEMofSingleSpanning`	AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)
`MeltingPointFasman` Full Usage: `MeltingPointFasman`	Melting point (Fasman, 1976)
`NNEIG` Full Usage: `NNEIG`	NNEIG index (Cornette et al., 1987)
`NormalizedBetaSheet` Full Usage: `NormalizedBetaSheet`	Normalized frequency of beta-sheet (Crawford et al., 1973)
`NormalizedHelix` Full Usage: `NormalizedHelix`	Normalized frequency of middle helix (Crawford et al., 1973)
`NormalizedTurn` Full Usage: `NormalizedTurn`	Normalized frequency of turn (Crawford et al., 1973)
`OpticalRotationFasman` Full Usage: `OpticalRotationFasman`	Optical rotation (Fasman, 1976)
`PK_CFasman` Full Usage: `PK_CFasman`	pK-C (Fasman, 1976)
`PK_NFasman` Full Usage: `PK_NFasman`	pK-N (Fasman, 1976)
`PKr` Full Usage: `PKr`	pKr (Christen, Jaussi, Benoit 2016)
`PRILS` Full Usage: `PRILS`	PRILS index (Cornette et al., 1987)
`PrincipalComponentI` Full Usage: `PrincipalComponentI`	Principal component I (Sneath, 1966)
`PrincipalComponentII` Full Usage: `PrincipalComponentII`	Principal component II (Sneath, 1966)
`PrincipalComponentIII` Full Usage: `PrincipalComponentIII`	Principal component III (Sneath, 1966)
`PrincipalComponentIV` Full Usage: `PrincipalComponentIV`	Principal component IV (Sneath, 1966)
`SWEIG` Full Usage: `SWEIG`	SWEIG index (Cornette et al., 1987)
`TOTFT` Full Usage: `TOTFT`	TOTFT index (Cornette et al., 1987)
`TOTLS` Full Usage: `TOTLS`	TOTLS index (Cornette et al., 1987)
`WeightsCoilMinus3` Full Usage: `WeightsCoilMinus3`
`WeightsHelixMinus3` Full Usage: `WeightsHelixMinus3`	Weights for alpha-helix at the window position of -3 (Qian-Sejnowski, 1988)

Static members

Static member	Description
`AminoProperty.toString` Full Usage: `AminoProperty.toString` Returns: `AminoProperty -> string`	Returns: `AminoProperty -> string`