OutputCustom (BioFSharp)

OutputCustom Type

Namespace: BioFSharp.BioContainers
Assembly: BioFSharp.BioContainers.dll
Parent Module: Blast
Base Type: obj
All Interfaces: IEquatable<OutputCustom> , IStructuralEquatable , IComparable<OutputCustom> , IComparable , IStructuralComparable

OutputType options Tabular, TabularWithComments, and CSV can be additionally configured to produce a custom format specified by space delimited format specifiers. When not provided, the default value is: 'qseqid sseqid pident length mismatch gapopen qstart qend sstart send evalue bitscore', which is equivalent to the keyword 'std'

Union cases

Union case	Description
`AlignmentLength` Full Usage: `AlignmentLength`
`BTOP` Full Usage: `BTOP`
`Bitscore` Full Usage: `Bitscore`
`Evalue` Full Usage: `Evalue`
`Frames` Full Usage: `Frames`
`GapCount` Full Usage: `GapCount`
`GapOpeningCount` Full Usage: `GapOpeningCount`
`Identity` Full Usage: `Identity`
`IdentityCount` Full Usage: `IdentityCount`
`MismatchCount` Full Usage: `MismatchCount`
`PositiveScoringMatch` Full Usage: `PositiveScoringMatch`
`PositiveScoringMatchCount` Full Usage: `PositiveScoringMatchCount`
`Query_Accesion` Full Usage: `Query_Accesion`
`Query_Accesion_Version` Full Usage: `Query_Accesion_Version`
`Query_AlignedPartOf` Full Usage: `Query_AlignedPartOf`
`Query_CoveragePerHSP` Full Usage: `Query_CoveragePerHSP`
`Query_CoveragePerSubject` Full Usage: `Query_CoveragePerSubject`
`Query_EndOfAlignment` Full Usage: `Query_EndOfAlignment`
`Query_Frames` Full Usage: `Query_Frames`
`Query_GI` Full Usage: `Query_GI`
`Query_Length` Full Usage: `Query_Length`
`Query_SeqId` Full Usage: `Query_SeqId`
`Query_StartOfAlignment` Full Usage: `Query_StartOfAlignment`
`RawScore` Full Usage: `RawScore`
`Subject_Accession` Full Usage: `Subject_Accession`
`Subject_Accession_Version` Full Usage: `Subject_Accession_Version`
`Subject_AlignedPartOf` Full Usage: `Subject_AlignedPartOf`
`Subject_All_Accession` Full Usage: `Subject_All_Accession`
`Subject_All_GIs` Full Usage: `Subject_All_GIs`
`Subject_All_SeqIds` Full Usage: `Subject_All_SeqIds`
`Subject_All_Titles` Full Usage: `Subject_All_Titles`
`Subject_Blast_Names` Full Usage: `Subject_Blast_Names`
`Subject_Common_Names` Full Usage: `Subject_Common_Names`
`Subject_EndOfAlignment` Full Usage: `Subject_EndOfAlignment`
`Subject_Frames` Full Usage: `Subject_Frames`
`Subject_GI` Full Usage: `Subject_GI`
`Subject_Length` Full Usage: `Subject_Length`
`Subject_Scientific_Names` Full Usage: `Subject_Scientific_Names`
`Subject_SeqId` Full Usage: `Subject_SeqId`
`Subject_StartOfAlignment` Full Usage: `Subject_StartOfAlignment`
`Subject_Strand` Full Usage: `Subject_Strand`
`Subject_Super_Kingdoms` Full Usage: `Subject_Super_Kingdoms`
`Subject_TaxonomyIDs` Full Usage: `Subject_TaxonomyIDs`
`Subject_Title` Full Usage: `Subject_Title`

Static members

Static member	Description
`OutputCustom.make` Full Usage: `OutputCustom.make` Returns: `OutputCustom -> string`	Returns: `OutputCustom -> string`