LastDBParams (BioFSharp)

LastDBParams Type

Namespace: BioFSharp.BioContainers
Assembly: BioFSharp.BioContainers.dll
Parent Module: LastAlign
Base Type: obj
All Interfaces: IEquatable<LastDBParams> , IStructuralEquatable , IComparable<LastDBParams> , IComparable , IStructuralComparable

Union case	Description
`Input InputOptions` Full Usage: `Input InputOptions` Parameters: Item : `InputOptions`	Item : `InputOptions`
`InputAsProteins` Full Usage: `InputAsProteins`	-p: interpret the sequences as proteins
`LowercaseSoftMasking` Full Usage: `LowercaseSoftMasking`	-c: soft-mask lowercase letters (in reference and query sequence
`OutputName string` Full Usage: `OutputName string` Parameters: Item : `string`	Item : `string`
`RepeatMarking int` Full Usage: `RepeatMarking int` Parameters: Item : `int`	-R: repeat-marking options (default=10) Item : `int`
`SeedingScheme SeedingSchemeOptions` Full Usage: `SeedingScheme SeedingSchemeOptions` Parameters: Item : `SeedingSchemeOptions`	-u: seeding scheme (default: YASS for DNA, else exact-match seeds) Item : `SeedingSchemeOptions`

Static member Description

Static member	Description
`LastDBParams.make` Full Usage: `LastDBParams.make` Returns: `LastDBParams -> string list`	Returns: `LastDBParams -> string list`
`LastDBParams.makeCmdWith m` Full Usage: `LastDBParams.makeCmdWith m` Parameters: m : `MountInfo` Returns: `LastDBParams -> string list`	m : `MountInfo` Returns: `LastDBParams -> string list`


                
                  
                    
                      LastDBParams.make

Full Usage: LastDBParams.make

Returns: LastDBParams -> string list


                
                  
                    
                      LastDBParams.makeCmdWith m

Full Usage: LastDBParams.makeCmdWith m

Parameters:

m : MountInfo

Returns: LastDBParams -> string list