AlignmentEndsTypeOptions (BioFSharp) | BioFSharp

AlignmentEndsTypeOptions Type

Namespace: BioFSharp.BioContainers
Assembly: BioFSharp.BioContainers.dll
Parent Module: STAR
Base Type: obj
All Interfaces: IEquatable<AlignmentEndsTypeOptions> , IStructuralEquatable , IComparable<AlignmentEndsTypeOptions> , IComparable , IStructuralComparable

type of read ends alignment

Union cases

Union case	Description
`EndToEnd` Full Usage: `EndToEnd`	force end-to-end read alignment, do not soft-clip
`Extend5pOfRead1` Full Usage: `Extend5pOfRead1`	fully extend only the 5p of the read1, all other ends: local alignment
`Extend5pOfReads12` Full Usage: `Extend5pOfReads12`	fully extend only the 5p of the both read1 and read2, all other ends: local alignment
`Local` Full Usage: `Local`	standard local alignment with soft-clipping allowed

Static members

Static member	Description
`AlignmentEndsTypeOptions.make` Full Usage: `AlignmentEndsTypeOptions.make` Returns: `AlignmentEndsTypeOptions -> string`	Returns: `AlignmentEndsTypeOptions -> string`