AlignmentSeedOptions (BioFSharp)

AlignmentSeedOptions Type

Namespace: BioFSharp.BioContainers
Assembly: BioFSharp.BioContainers.dll
Parent Module: STAR
Base Type: obj
All Interfaces: IEquatable<AlignmentSeedOptions> , IStructuralEquatable , IComparable<AlignmentSeedOptions> , IComparable , IStructuralComparable

Union case	Description
`MultimapNmax int` Full Usage: `MultimapNmax int` Parameters: Item : `int`	only pieces that map fewer than this value are utilized in the stitching procedure Item : `int`
`NoneLociPerWindow int` Full Usage: `NoneLociPerWindow int` Parameters: Item : `int`	max number of one seed loci per window Item : `int`
`PerReadNmax int` Full Usage: `PerReadNmax int` Parameters: Item : `int`	max number of seeds per read Item : `int`
`PerWindowNmax int` Full Usage: `PerWindowNmax int` Parameters: Item : `int`	max number of seeds per window Item : `int`
`SearchLmax int` Full Usage: `SearchLmax int` Parameters: Item : `int`	defines the maximum length of the seeds, if =0 max seed lengthis infinite Item : `int`
`SearchStartLmax int` Full Usage: `SearchStartLmax int` Parameters: Item : `int`	defines the search start point through the read - the read is split into pieces no longer than this value Item : `int`
`SearchStartLmaxOverLread float` Full Usage: `SearchStartLmaxOverLread float` Parameters: Item : `float`	seedSearchStartLmax normalized to read length (sum of mates' lengths for paired-end reads) Item : `float`
`SplitMin int` Full Usage: `SplitMin int` Parameters: Item : `int`	min length of the seed sequences split by Ns or mate gap Item : `int`

Static member	Description
`AlignmentSeedOptions.makeCmd` Full Usage: `AlignmentSeedOptions.makeCmd` Returns: `AlignmentSeedOptions -> string list`	Returns: `AlignmentSeedOptions -> string list`