AlignmentWindowOptions (BioFSharp) | BioFSharp

AlignmentWindowOptions Type

Namespace: BioFSharp.BioContainers
Assembly: BioFSharp.BioContainers.dll
Parent Module: STAR
Base Type: obj
All Interfaces: IEquatable<AlignmentWindowOptions> , IStructuralEquatable , IComparable<AlignmentWindowOptions> , IComparable , IStructuralComparable

Windows, Anchors, Binning Options

Union cases

Union case	Description
`AnchorDistNbins int` Full Usage: `AnchorDistNbins int` Parameters: Item : `int`	max number of bins between two anchors that allows aggregation of anchors into one window Item : `int`
`AnchorMultimapNmax int` Full Usage: `AnchorMultimapNmax int` Parameters: Item : `int`	max number of loci anchors are allowed to map to Item : `int`
`BinNbits int` Full Usage: `BinNbits int` Parameters: Item : `int`	=log2(winBin), where winBin is the size of the bin for the windows/clustering, each window will occupy an integer number of bins. Item : `int`
`FlankNbins int` Full Usage: `FlankNbins int` Parameters: Item : `int`	log2(winFlank), where win Flank is the size of the left and right flanking regions for each window Item : `int`
`ReadCoverageBasesMin int` Full Usage: `ReadCoverageBasesMin int` Parameters: Item : `int`	minimum number of bases covered by the seeds in a window , for STARlong algorithm only. Item : `int`
`ReadCoverageRelativeMin float` Full Usage: `ReadCoverageRelativeMin float` Parameters: Item : `float`	minimum relative coverage of the read sequence by the seeds in a window, for STARlong algorithm only. Item : `float`

Static members

Static member	Description
`AlignmentWindowOptions.makeCmd` Full Usage: `AlignmentWindowOptions.makeCmd` Returns: `AlignmentWindowOptions -> string list`	Returns: `AlignmentWindowOptions -> string list`