ChimericAlignmentOutputTypeOptions (BioFSharp) | BioFSharp

ChimericAlignmentOutputTypeOptions Type

Namespace: BioFSharp.BioContainers
Assembly: BioFSharp.BioContainers.dll
Parent Module: STAR
Base Type: obj
All Interfaces: IEquatable<ChimericAlignmentOutputTypeOptions> , IStructuralEquatable , IComparable<ChimericAlignmentOutputTypeOptions> , IComparable , IStructuralComparable

type of chimeric output

Union cases

Union case	Description
`Junctions` Full Usage: `Junctions`	Chimeric.out.junction output old SAM into separate Chimeric.out.sam file output into main aligned BAM files (Aligned.*.bam) (default) hard-clipping in the CIGAR for supplemental chimeric alignments (defaultif no 2nd word is present) soft-clipping in the CIGAR for supplemental chimeric alignments
`SeparateSAMold` Full Usage: `SeparateSAMold`
`WithinBAM` Full Usage: `WithinBAM`
`WithinBAMHardClip` Full Usage: `WithinBAMHardClip`
`WithinBAMSoftClip` Full Usage: `WithinBAMSoftClip`

Static members

Static member	Description
`ChimericAlignmentOutputTypeOptions.make` Full Usage: `ChimericAlignmentOutputTypeOptions.make` Returns: `ChimericAlignmentOutputTypeOptions -> string`	Returns: `ChimericAlignmentOutputTypeOptions -> string`