LimitParams (BioFSharp)

LimitParams Type

Namespace: BioFSharp.BioContainers
Assembly: BioFSharp.BioContainers.dll
Parent Module: STAR
Base Type: obj
All Interfaces: IEquatable<LimitParams> , IStructuralEquatable , IComparable<LimitParams> , IComparable , IStructuralComparable

Union case	Description
`BAMsortRAM int` Full Usage: `BAMsortRAM int` Parameters: Item : `int`	maximum available RAM (bytes) for sorting BAM. If =0, it will be set to the genome index size. 0 value can only be used with --genomeLoad NoSharedMemory option. Item : `int`
`GenomeGenerateRAM int` Full Usage: `GenomeGenerateRAM int` Parameters: Item : `int`	maximum available RAM (bytes) for genome generation Item : `int`
`IObufferSize int` Full Usage: `IObufferSize int` Parameters: Item : `int`	max available buffers size (bytes) for input/output, per thread Item : `int`
`NreadsSoft int` Full Usage: `NreadsSoft int` Parameters: Item : `int`	soft limit on the number of reads Item : `int`
`OutSAMoneReadBytes int` Full Usage: `OutSAMoneReadBytes int` Parameters: Item : `int`	max number of junctions for one read (including all multi-mappers) Item : `int`
`OutSJcollapsed int` Full Usage: `OutSJcollapsed int` Parameters: Item : `int`	max number of collapsed junctions Item : `int`
`OutSJoneRead int` Full Usage: `OutSJoneRead int` Parameters: Item : `int`	max size of the SAM record (bytes) for one read. Recommended value: >(2(LengthMate1+LengthMate2+100)outFilterMultimapNmax Item : `int`
`SjdbInsertNsj int` Full Usage: `SjdbInsertNsj int` Parameters: Item : `int`	maximum number of junction to be inserted to the genome on the fly at the mapping stage, including those from annotations and those detected in the 1st step of the 2-pass run Item : `int`

Static member	Description
`LimitParams.makeCmd` Full Usage: `LimitParams.makeCmd` Returns: `LimitParams -> string list`	Returns: `LimitParams -> string list`