MateClippingOptions (BioFSharp) | BioFSharp

MateClippingOptions Type

Namespace: BioFSharp.BioContainers
Assembly: BioFSharp.BioContainers.dll
Parent Module: STAR
Base Type: obj
All Interfaces: IEquatable<MateClippingOptions> , IStructuralEquatable , IComparable<MateClippingOptions> , IComparable , IStructuralComparable

clipping options from either end of the mates

Union cases

Union case	Description
`AdapterMisMatchPortion3p(float, float option)` Full Usage: `AdapterMisMatchPortion3p(float, float option)` Parameters: Item1 : `float` Item2 : `float option`	max proportion of mismatches for 3p adpater clipping for each mate. If one value is given, it will be assumed the same for both mates. Item1 : `float` Item2 : `float option`
`AdapterSeq3p(string, string option)` Full Usage: `AdapterSeq3p(string, string option)` Parameters: Item1 : `string` Item2 : `string option`	adapter sequences to clip from 3p of each mate. If one value is given, it will be assumed the same for both mates. Item1 : `string` Item2 : `string option`
`Bases3p(int, int option)` Full Usage: `Bases3p(int, int option)` Parameters: Item1 : `int` Item2 : `int option`	number(s) of bases to clip from 3p of each mate. If one value is given, it will be assumed the same for both mates. Item1 : `int` Item2 : `int option`
`Bases5p(int, int option)` Full Usage: `Bases5p(int, int option)` Parameters: Item1 : `int` Item2 : `int option`	number(s) of bases to clip from 5p of each mate. If one value is given, it will be assumed the same for both mates. Item1 : `int` Item2 : `int option`
`BasesAfterAdapter3p(int, int option)` Full Usage: `BasesAfterAdapter3p(int, int option)` Parameters: Item1 : `int` Item2 : `int option`	number of bases to clip from 3p of each mate after the adapter clipping. If one value is given, it will be assumed the same for both mates. Item1 : `int` Item2 : `int option`

Static members

Static member	Description
`MateClippingOptions.makeCmd` Full Usage: `MateClippingOptions.makeCmd` Returns: `MateClippingOptions -> string list`	Returns: `MateClippingOptions -> string list`