OutputFilteringParams (BioFSharp) | BioFSharp

OutputFilteringParams Type

Namespace: BioFSharp.BioContainers
Assembly: BioFSharp.BioContainers.dll
Parent Module: STAR
Base Type: obj
All Interfaces: IEquatable<OutputFilteringParams> , IStructuralEquatable , IComparable<OutputFilteringParams> , IComparable , IStructuralComparable

Union cases

Union case	Description
`FilterType OutputFilterTypeOptions` Full Usage: `FilterType OutputFilterTypeOptions` Parameters: Item : `OutputFilterTypeOptions`	type of filtering Item : `OutputFilterTypeOptions`
`IntronMotifs OutputFilterIntronMotifsOptions` Full Usage: `IntronMotifs OutputFilterIntronMotifsOptions` Parameters: Item : `OutputFilterIntronMotifsOptions`	filter alignment using their motifs Item : `OutputFilterIntronMotifsOptions`
`MatchNmin int` Full Usage: `MatchNmin int` Parameters: Item : `int`	alignment will be output only if the number of matched bases is higher than or equal to this value. Item : `int`
`MatchNminOverLread float` Full Usage: `MatchNminOverLread float` Parameters: Item : `float`	same as outFilterMatchNmin, but normalized to the read length (sum of mates' lengths for paired-end reads). Item : `float`
`MismatchNmax int` Full Usage: `MismatchNmax int` Parameters: Item : `int`	alignment will be output only if it has no more mismatches than this value. Item : `int`
`MismatchNoverLmax float` Full Usage: `MismatchNoverLmax float` Parameters: Item : `float`	alignment will be output only if its ratio of mismatches to mapped length is less than or equal to this value. Item : `float`
`MismatchNoverReadLmax float` Full Usage: `MismatchNoverReadLmax float` Parameters: Item : `float`	alignment will be output only if its ratio of mismatches to read length is less than or equal to this value. Item : `float`
`MultimapNmax int` Full Usage: `MultimapNmax int` Parameters: Item : `int`	maximum number of loci the read is allowed to map to. Alignments (all of them) will be output only if the read maps to no more loci than this value. Otherwise no alignments will be output, and the read will be counted as "mapped to too many loci" in the Log.final.out . Item : `int`
`MultimapScoreRange int` Full Usage: `MultimapScoreRange int` Parameters: Item : `int`	the score range below the maximum score for multimapping alignments Item : `int`
`RemoveInconsistentIntronStrands bool` Full Usage: `RemoveInconsistentIntronStrands bool` Parameters: Item : `bool`	filter alignments: remove alignments that have junctions with inconsistent strands or no filtering Item : `bool`
`ScoreMin int` Full Usage: `ScoreMin int` Parameters: Item : `int`	alignment will be output only if its score is higher than or equal to this value. Item : `int`
`ScoreMinOverLread float` Full Usage: `ScoreMinOverLread float` Parameters: Item : `float`	same as outFilterScoreMin, but normalized to read length (sum of mates' lengths for paired-end reads) Item : `float`
`SpliceJunctionsFiltering OutputFilteringSpliceJunctionsOptions list` Full Usage: `SpliceJunctionsFiltering OutputFilteringSpliceJunctionsOptions list` Parameters: Item : `OutputFilteringSpliceJunctionsOptions list`	various splice junction filtering options Item : `OutputFilteringSpliceJunctionsOptions list`

Static members

Static member	Description
`OutputFilteringParams.makeCmd` Full Usage: `OutputFilteringParams.makeCmd` Returns: `OutputFilteringParams -> string list`	Returns: `OutputFilteringParams -> string list`