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OutputWiggleParams Type

Union cases

Union case Description

type of normalization for the signal

Item : WiggleNormalizationOptions

ReferencesPrefix string

Full Usage: ReferencesPrefix string

Parameters:
    Item : string

prefix matching reference names to include in the output wiggle file, e.g. "chr", default "-" - include all references

Item : string

strandedness of wiggle/bedGraph output

Item : WiggleStrandOptions

WiggleType WiggleTypeOptions

Full Usage: WiggleType WiggleTypeOptions

Parameters:

type of signal output, e.g. "bedGraph" OR "bedGraph read1_5p". Requires sorted BAM: --outSAMtype BAM SortedByCoordinate .

Item : WiggleTypeOptions

Static members

Static member Description

OutputWiggleParams.makeCmd

Full Usage: OutputWiggleParams.makeCmd

Returns: OutputWiggleParams -> string list
Returns: OutputWiggleParams -> string list

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