RemoveDuplicatesTypeOptions (BioFSharp) | BioFSharp

RemoveDuplicatesTypeOptions Type

Namespace: BioFSharp.BioContainers
Assembly: BioFSharp.BioContainers.dll
Parent Module: STAR
Base Type: obj
All Interfaces: IEquatable<RemoveDuplicatesTypeOptions> , IStructuralEquatable , IComparable<RemoveDuplicatesTypeOptions> , IComparable , IStructuralComparable

mark duplicates in the BAM file, for now only works with (i) sorted BAM fed with inputBAMfile, and (ii) for paired-end alignments only

Union cases

Union case	Description
`NoRemoval` Full Usage: `NoRemoval`	no duplicate removal/marking
`UniqueIdentical` Full Usage: `UniqueIdentical`	mark all multimappers, and duplicate unique mappers. The coordinates, FLAG, CIGAR must be identical
`UniqueIdenticalNotMulti` Full Usage: `UniqueIdenticalNotMulti`	mark duplicate unique mappers but not multimappers

Static members

Static member	Description
`RemoveDuplicatesTypeOptions.make` Full Usage: `RemoveDuplicatesTypeOptions.make` Returns: `RemoveDuplicatesTypeOptions -> string`	Returns: `RemoveDuplicatesTypeOptions -> string`