STARSoloCellBarcodeWhiteListOptions (BioFSharp) | BioFSharp

STARSoloCellBarcodeWhiteListOptions Type

Namespace: BioFSharp.BioContainers
Assembly: BioFSharp.BioContainers.dll
Parent Module: STAR
Base Type: obj
All Interfaces: IEquatable<STARSoloCellBarcodeWhiteListOptions> , IStructuralEquatable , IComparable<STARSoloCellBarcodeWhiteListOptions> , IComparable , IStructuralComparable

matching the Cell Barcodes to the WhiteList

Union cases

Union case	Description
`Exact` Full Usage: `Exact`	only exact matches allowed
`OneMM` Full Usage: `OneMM`	only one match in whitelist with 1 mismatched base allowed. Allowed CBs have to have at least one read with exact match.
`OneMM_multi` Full Usage: `OneMM_multi`	multiple matches in whitelist with 1 mismatched base allowed, posterior probability calculation is used choose one of the matches. Allowed CBs have to have at least one read with exact match. Similar to CellRanger 2.2.0
`OneMM_multi_pseudocounts` Full Usage: `OneMM_multi_pseudocounts`	same as 1MM_Multi, but pseudocounts of 1 are added to all whitelist barcodes. Similar to CellRanger 3.x.x

Static members

Static member	Description
`STARSoloCellBarcodeWhiteListOptions.make` Full Usage: `STARSoloCellBarcodeWhiteListOptions.make` Returns: `STARSoloCellBarcodeWhiteListOptions -> string`	Returns: `STARSoloCellBarcodeWhiteListOptions -> string`