STARSoloUMIDeDuplicationOptions (BioFSharp) | BioFSharp

STARSoloUMIDeDuplicationOptions Type

Namespace: BioFSharp.BioContainers
Assembly: BioFSharp.BioContainers.dll
Parent Module: STAR
Base Type: obj
All Interfaces: IEquatable<STARSoloUMIDeDuplicationOptions> , IStructuralEquatable , IComparable<STARSoloUMIDeDuplicationOptions> , IComparable , IStructuralComparable

type of UMI deduplication (collapsing) algorithm

Union cases

Union case	Description
`Exact` Full Usage: `Exact`	only exactly matching UMIs are collapsed
`OneMM_All` Full Usage: `OneMM_All`	all UMIs with 1 mismatch distance to each other are collapsed (i.e. counted once)
`OneMM_Directional` Full Usage: `OneMM_Directional`	follows the "directional" method from the UMI-tools by Smith, Heger and Sudbery (Genome Research 2017).

Static members

Static member	Description
`STARSoloUMIDeDuplicationOptions.make` Full Usage: `STARSoloUMIDeDuplicationOptions.make` Returns: `STARSoloUMIDeDuplicationOptions -> string`	Returns: `STARSoloUMIDeDuplicationOptions -> string`