ClusteringCustom (BioFSharp)

ClusteringCustom Type

Namespace: BioFSharp.IO
Assembly: BioFSharp.IO.dll
Parent Module: Parameters
Base Type: obj
All Interfaces: IEquatable<ClusteringCustom> , IStructuralEquatable , IComparable<ClusteringCustom> , IComparable , IStructuralComparable

Optional modifiers to specify clustering

Union case	Description
`ClusterSize int` Full Usage: `ClusterSize int` Parameters: Item : `int`	Soft maximum of sequences in sub-clusters Item : `int`
`ClusteringOut string` Full Usage: `ClusteringOut string` Parameters: Item : `string`	Clustering output file Item : `string`
`DistanceMatrixInput string` Full Usage: `DistanceMatrixInput string` Parameters: Item : `string`	Pairwise distance matrix input file (skips distance computation) Item : `string`
`DistanceMatrixOutput string` Full Usage: `DistanceMatrixOutput string` Parameters: Item : `string`	Pairwise distance matrix output file Item : `string`
`Full` Full Usage: `Full`	Use full distance matrix for guide-tree calculation (slow; mBed is default)
`FullIter` Full Usage: `FullIter`	Use full distance matrix for guide-tree calculation during iteration (mBed is default)
`GuideTreeInput string` Full Usage: `GuideTreeInput string` Parameters: Item : `string`	Guide tree input file (skips distance computation and guide tree clustering step) Item : `string`
`GuideTreeOutput string` Full Usage: `GuideTreeOutput string` Parameters: Item : `string`	Guide tree output file Item : `string`
`PercentID` Full Usage: `PercentID`	convert distances into percent identities (default no)
`UseKimura` Full Usage: `UseKimura`	Use Kimura distance correction for aligned sequences (default no)