BAMHandlingOptions (BioFSharp)

BAMHandlingOptions Type

Namespace: BioFSharp.BioContainers
Assembly: BioFSharp.BioContainers.dll
Parent Module: STAR
Base Type: obj
All Interfaces: IEquatable<BAMHandlingOptions> , IStructuralEquatable , IComparable<BAMHandlingOptions> , IComparable , IStructuralComparable

Union case	Description
`Compression int` Full Usage: `Compression int` Parameters: Item : `int`	BAM compression level, -1=default compression (6?), 0=no compression, 10=maximum compression Item : `int`
`DuplicatesMate2basesN int` Full Usage: `DuplicatesMate2basesN int` Parameters: Item : `int`	number of bases from the 5' of mate 2 to use in collapsing (e.g. for RAMPAGE) Item : `int`
`RemoveDuplicatesType RemoveDuplicatesTypeOptions` Full Usage: `RemoveDuplicatesType RemoveDuplicatesTypeOptions` Parameters: Item : `RemoveDuplicatesTypeOptions`	mark duplicates in the BAM file, for now only works with (i) sorted BAM fed with inputBAMfile, and (ii) for paired-end alignments only Item : `RemoveDuplicatesTypeOptions`
`SortingBinsNumber int` Full Usage: `SortingBinsNumber int` Parameters: Item : `int`	number of genome bins fo coordinate-sorting Item : `int`
`SortingThreadNumber int` Full Usage: `SortingThreadNumber int` Parameters: Item : `int`	number of threads for BAM sorting. 0 will default to min(6,--runThreadN). Item : `int`

Static member	Description
`BAMHandlingOptions.makeCmd` Full Usage: `BAMHandlingOptions.makeCmd` Returns: `BAMHandlingOptions -> string list`	Returns: `BAMHandlingOptions -> string list`