All posts

All

2023-3-31

Gene expression modelling or how to solve ODEs in F#

An introduction to the libary FsODE explained on a simple genregulation model.
Posted on 2023-3-31 by Felix Jung in Advanced

2023-2-17

ontology 1o1

A high-level introduction to ontologies
Posted on 2023-2-17 by Oliver Maus in Study Notes

2023-2-10

Study note - ontologies

An introduction on how to use ontologies with F#
Posted on 2023-2-10 by Benedikt Venn in Study Notes

2023-2-10

Study note - git

An introduction to git with a focus on collaborative research data management
Posted on 2023-2-10 by Benedikt Venn in Study Notes

2022-6-2

SAM - Significance Analysis of Microarrays

This blogpost deals with a statistical analysis for gene expression microarray experiments, called __Significance Analysis of Microarrays (SAM)__ , that - despite the name - is not restricted for microarray analysis but serves as a blue print for any permutation test
Posted on 2022-6-2 by Selina Ziegler in Study Notes

2022-5-5

Computation expressions: Usage examples

Introduction to F# computation expressions with an example implementation
Posted on 2022-5-5 by Heinrich Lukas Weil in Study Notes

2022-4-25

VS Code Remote-Container and the ARC

In this blogpost I will deal with the question how computational data analysis could look like in a reproducible environment.
Posted on 2022-4-25 by Kevin Frey in Advanced

2022-3-18

Console apps: Above and beyond

A deep-dive on creating console applications.
Posted on 2022-3-18 by Oliver Maus in Advanced

2022-1-13

Community detection or Principal Component Analysis - Different apporaches to analyze big datasets

The goal of this blogpost is to showcase different methods to analyze big datasets. The graph-Analysis apporach featuring community detection and ontology enrichment vs the principal component analysis approach that reduces the dimensions of complex datasets.
Posted on 2022-1-13 by Christopher Lux in Study Notes

2021-11-18

q values

A detailed look at q values and the multiple testing problem
Posted on 2021-11-18 by Benedikt Venn in Advanced

2021-11-5

Modelling and visualizing sequence features with BioFSharp and Plotly.NET

Advanced usage of Plotly.NET to visualize any sequence feature
Posted on 2021-11-5 by Kevin Schneider in Advanced

2021-10-25

Visualizing relationships between sets with Plotly.NET

Advanced usage of Plotly.NET for creating Venn and UpsetPlot diagramms to visualize relationshipts between sets of any size.
Posted on 2021-10-25 by Jonathan Ott in Advanced

2021-10-1

What is Fable and how to use it

A detailed look at F# <-> JavaScript transpilation with Fable
Posted on 2021-10-1 by Kevin Frey in Advanced

2021-9-21

How to develop and use a JSON Schema

A detailed look at creating JSON schema and using them for validation
Posted on 2021-9-21 by Oliver Maus in Advanced